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Rescaled range and transition matrix analysis of DNA sequences
Yu, ZG; Chen, GY; Yu, ZG , Xiangtan Univ, Dept Math, Xiangtan 411105, Hunan Province, Peoples R China.
2000
发表期刊COMMUNICATIONS IN THEORETICAL PHYSICS
ISSN0253-6102
卷号33期号:4页码:673-678
摘要We treat some fractal and statistical features of the DNA sequences. First, a fractal record model of DNA sequence is proposed by mapping DNA sequences to integer sequences, followed by the R/S analysis of the model and computation of the Hurst exponents. Second, we consider the transition between the four kinds of bases within DNA. The transition matrix analysis of DNA sequences shows that some measures of complexity based on transition proportion matrices are of interest. The main results are: I) H-exon > H-intron for virus. But H-intron > H-exon for the species which have the shape of cell except for drosophila. 2) For virus, E. coli, yeast, drosophila, mouse and human, measure H of transition proportion matrix of exon is larger than that of intron, and measures lambda, D, C, (D) over tilde and (C) over tilde of transition proportion matrix of intron are larger than those of exon. 3) Regarding the evolution, we find that when the species go higher in grade, the measures D, C, (D) over tilde and (C) over tilde of exon become larger, the measure H of exon becomes less except for yeast. Hence for species of higher grade, the transition rate among the four kinds of bases deviates further from the equilibrium.
部门归属Xiangtan Univ, Dept Math, Xiangtan 411105, Hunan Province, Peoples R China; Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China
关键词Fractal Correlations Spectrum Model
学科领域Physics
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收录类别SCI
WOS记录号WOS:000087688200028
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文献类型期刊论文
条目标识符http://ir.itp.ac.cn/handle/311006/12955
专题理论物理所1978-2010年知识产出
通讯作者Yu, ZG , Xiangtan Univ, Dept Math, Xiangtan 411105, Hunan Province, Peoples R China.
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GB/T 7714
Yu, ZG,Chen, GY,Yu, ZG , Xiangtan Univ, Dept Math, Xiangtan 411105, Hunan Province, Peoples R China.. Rescaled range and transition matrix analysis of DNA sequences[J]. COMMUNICATIONS IN THEORETICAL PHYSICS,2000,33(4):673-678.
APA Yu, ZG,Chen, GY,&Yu, ZG , Xiangtan Univ, Dept Math, Xiangtan 411105, Hunan Province, Peoples R China..(2000).Rescaled range and transition matrix analysis of DNA sequences.COMMUNICATIONS IN THEORETICAL PHYSICS,33(4),673-678.
MLA Yu, ZG,et al."Rescaled range and transition matrix analysis of DNA sequences".COMMUNICATIONS IN THEORETICAL PHYSICS 33.4(2000):673-678.
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