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Molecular phylogeny of coronaviruses including human SARS-CoV
Gao, L; Qi, J; Wei, HB; Sun, YG; Hao, BL; Hao, BL , Fudan Univ, T Life Res Ctr, Shanghai 200433, Peoples R China.
2003
发表期刊CHINESE SCIENCE BULLETIN
ISSN1001-6538
卷号48期号:12页码:1170-1174
摘要Phylogenetic tree of coronaviruses (CoVs) including the human SARS-associated virus is reconstructed from complete genomes by using our newly developed K-string composition approach. The relation of the human SARS-CoV to other coronaviruses, i.e. the rooting of the tree is suggested by choosing an appropriate outgroup. SARS-CoV makes a separate group closer but still distant from G2 (CoVs in mammalian host). The relation between different isolates of the human SARS virus is inferred by first constructing an ultrametric distance matrix from counting sequence variations in the genomes. The resulting tree is consistent with clinic relations between the SARS-CoV isolates. In addition to a larger variety of coronavirus genomes these results provide phylogenetic knowledge based on independent novel methodology as compared to recent phylogenetic studies on SARS-CoV.
部门归属Fudan Univ, T Life Res Ctr, Shanghai 200433, Peoples R China; Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China; Zhejiang Univ, Grad Sch, Hangzhou 310027, Peoples R China; Chinese Acad Sci, Beijing Genom Inst, Hangzhou Branch, Hangzhou 310008, Peoples R China
关键词Acute Respiratory Syndrome Sequence
学科领域Physics
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收录类别SCI
WOS记录号WOS:000184249300002
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被引频次:21[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.itp.ac.cn/handle/311006/13280
专题理论物理所SCI论文
通讯作者Hao, BL , Fudan Univ, T Life Res Ctr, Shanghai 200433, Peoples R China.
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GB/T 7714
Gao, L,Qi, J,Wei, HB,et al. Molecular phylogeny of coronaviruses including human SARS-CoV[J]. CHINESE SCIENCE BULLETIN,2003,48(12):1170-1174.
APA Gao, L,Qi, J,Wei, HB,Sun, YG,Hao, BL,&Hao, BL , Fudan Univ, T Life Res Ctr, Shanghai 200433, Peoples R China..(2003).Molecular phylogeny of coronaviruses including human SARS-CoV.CHINESE SCIENCE BULLETIN,48(12),1170-1174.
MLA Gao, L,et al."Molecular phylogeny of coronaviruses including human SARS-CoV".CHINESE SCIENCE BULLETIN 48.12(2003):1170-1174.
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