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题名: Distances and classification of amino acids for different protein secondary structures
作者: Liu, X ;  Zhang, LM ;  Guan, S ;  Zheng, WM
刊名: PHYSICAL REVIEW E
出版日期: 2003
卷号: 67, 期号:5, 页码:-
关键词: SEQUENCES
学科分类: Physics
通讯作者: Liu, X , Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China.
部门归属: Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China; N Jiaotong Univ, Sch Sci, Beijing 100044, Peoples R China; Peking Univ, Ctr Bioinformat, Beijing 100871, Peoples R China
英文摘要: Window profiles of amino acids in protein sequences are used to describe the amino acid environment. The relative entropy or Kullback-Leibler distance derived from these profiles is used as a measure of dissimilarity for comparison of amino acids and secondary structure conformations. Distance matrices of amino acid pairs at different conformations are obtained, which display a non-negligible dependence of amino acid similarity on conformations. Based on the conformation specific distances, a clustering analysis for amino acids is conducted.
收录类别: SCI
原文出处: 查看原文
WOS记录号: WOS:000183482200080
Citation statistics: 
内容类型: 期刊论文
URI标识: http://ir.itp.ac.cn/handle/311006/13314
Appears in Collections:理论物理所1978-2010年知识产出_期刊论文

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Recommended Citation:
Liu, X,Zhang, LM,Guan, S,et al. Distances and classification of amino acids for different protein secondary structures[J]. PHYSICAL REVIEW E,2003,67(5):-.
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