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Distances and classification of amino acids for different protein secondary structures
Liu, X; Zhang, LM; Guan, S; Zheng, WM; Liu, X , Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China.
2003
发表期刊PHYSICAL REVIEW E
ISSN1539-3755
卷号67期号:5页码:-
摘要Window profiles of amino acids in protein sequences are used to describe the amino acid environment. The relative entropy or Kullback-Leibler distance derived from these profiles is used as a measure of dissimilarity for comparison of amino acids and secondary structure conformations. Distance matrices of amino acid pairs at different conformations are obtained, which display a non-negligible dependence of amino acid similarity on conformations. Based on the conformation specific distances, a clustering analysis for amino acids is conducted.
部门归属Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China; N Jiaotong Univ, Sch Sci, Beijing 100044, Peoples R China; Peking Univ, Ctr Bioinformat, Beijing 100871, Peoples R China
关键词Sequences
学科领域Physics
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收录类别SCI
WOS记录号WOS:000183482200080
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被引频次:8[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.itp.ac.cn/handle/311006/13314
专题1978-2010年知识产出
通讯作者Liu, X , Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China.
推荐引用方式
GB/T 7714
Liu, X,Zhang, LM,Guan, S,et al. Distances and classification of amino acids for different protein secondary structures[J]. PHYSICAL REVIEW E,2003,67(5):-.
APA Liu, X,Zhang, LM,Guan, S,Zheng, WM,&Liu, X , Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China..(2003).Distances and classification of amino acids for different protein secondary structures.PHYSICAL REVIEW E,67(5),-.
MLA Liu, X,et al."Distances and classification of amino acids for different protein secondary structures".PHYSICAL REVIEW E 67.5(2003):-.
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