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A draft sequence of the rice genome (Oryza sativa L. ssp indica)
Yu, J; Hu, SN; Wang, J; Wong, GKS; Li, SG; Liu, B; Deng, YJ; Dai, L; Zhou, Y; Zhang, XQ; Cao, ML; Liu, J; Sun, JD; Tang, JB; Chen, YJ; Huang, XB; Lin, W; Ye, C; Tong, W; Cong, LJ; Geng, JN; Han, YJ; Li, L; Li, W; Hu, GQ; Huang, XG; Li, WJ; Li, J; Liu, ZW; Liu, JP; Qi, QH; Liu, JS; Li, T; Wang, XG; Lu, H; Wu, TT; Zhu, M; Ni, PX; Han, H; Dong, W; Ren, XY; Feng, XL; Cui, P; Li, XR; Wang, H; Xu, X; Zhai, WX; Xu, Z; Zhang, JS; He, SJ; Zhang, JG; Xu, JC; Zhang, KL; Zheng, XW; Dong, JH; Zeng, WY; Tao, L; Ye, J; Tan, J; Ren, XD; Chen, XW; He, J; Liu, DF; Tian, W; Tian, CG; Xia, HG; Bao, QY; Li, G; Gao, H; Cao, T; Zhao, WM; Li, P; Chen, W; Wang, XD; Zhang, Y; Hu, JF; Liu, S; Yang, J; Zhang, GY; Xiong, YQ; Li, ZJ; Mao, L; Zhou, CS; Zhu, Z; Chen, RS; Hao, BL; Zheng, WM; Chen, SY; Guo, W; Li, GJ; Liu, SQ; Tao, M; Zhu, LH; Yuan, LP; Yang, HM; Yuan, LP , Chinese Acad Sci, Inst Genet, Beijing 100101, Peoples R China.
2002
发表期刊SCIENCE
ISSN0036-8075
卷号296期号:5565页码:79-92
摘要We have produced a draft sequence of the rice genome for the most widely cultivated subspecies in China, Oryza sativa L. ssp. indica, by whole-genome shotgun sequencing. The genome was 466 megabases in size, with an estimated 46,022 to 55,615 genes. Functional coverage in the assembled sequences was 92.0%. About 42.2% of the genome was in exact 20-nucleotide oligomer repeats, and most of the transposons were in the intergenic regions between genes. Although 80.6% of predicted Arabidopsis thaliana genes had a homolog in rice, only 49.4% of predicted rice genes had a homolog in A. thaliana. The large proportion of rice genes with no recognizable homologs is due to a gradient in the GC-content of rice coding sequences.
部门归属Chinese Acad Sci, Inst Genet, Beijing 100101, Peoples R China; Chinese Acad Sci, Beijing Genom Inst, Ctr Genom & Bioinformat, Beijing 101300, Peoples R China; Zhejiang Univ, Hangzhou Genom Inst, Inst Bioinformat, Key Lab Bioinformat Zhejiang Prov, Hangzhou 310007, Peoples R China; Univ Washington, Dept Med, Genome Ctr, Seattle, WA 98195 USA; Peking Univ, Coll Life Sci, Beijing 100871, Peoples R China; Xi An Jiao Tong Univ, Coll Med, Xian 710061, Peoples R China; Fudan Univ, Shanghai 200433, Peoples R China; Natl Hybrid Rice R&D Ctr, Changsha 410125, Peoples R China; Chinese Acad Sci, Inst Biophys, Lab Bioinformat, Beijing 100101, Peoples R China; Digital China Ltd, Beijing 100080, Peoples R China; Chinese Acad Sci, Inst Comp Technol, Beijing 100080, Peoples R China; Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China
关键词Transposable Elements Arabidopsis-thaliana Human Genes Comparative Genetics Biallelic Markers Grass Genomes Cpg Islands Dna Plants Identification
学科领域Physics
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收录类别SCI
WOS记录号WOS:000174858800038
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被引频次:1948[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.itp.ac.cn/handle/311006/13544
专题理论物理所1978-2010年知识产出
通讯作者Yuan, LP , Chinese Acad Sci, Inst Genet, Beijing 100101, Peoples R China.
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Yu, J,Hu, SN,Wang, J,et al. A draft sequence of the rice genome (Oryza sativa L. ssp indica)[J]. SCIENCE,2002,296(5565):79-92.
APA Yu, J.,Hu, SN.,Wang, J.,Wong, GKS.,Li, SG.,...&Yuan, LP , Chinese Acad Sci, Inst Genet, Beijing 100101, Peoples R China..(2002).A draft sequence of the rice genome (Oryza sativa L. ssp indica).SCIENCE,296(5565),79-92.
MLA Yu, J,et al."A draft sequence of the rice genome (Oryza sativa L. ssp indica)".SCIENCE 296.5565(2002):79-92.
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