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题名: A draft sequence of the rice genome (Oryza sativa L. ssp indica)
作者: Yu, J ;  Hu, SN ;  Wang, J ;  Wong, GKS ;  Li, SG ;  Liu, B ;  Deng, YJ ;  Dai, L ;  Zhou, Y ;  Zhang, XQ ;  Cao, ML ;  Liu, J ;  Sun, JD ;  Tang, JB ;  Chen, YJ ;  Huang, XB ;  Lin, W ;  Ye, C ;  Tong, W ;  Cong, LJ ;  Geng, JN ;  Han, YJ ;  Li, L ;  Li, W ;  Hu, GQ ;  Huang, XG ;  Li, WJ ;  Li, J ;  Liu, ZW ;  Li, L ;  Liu, JP ;  Qi, QH ;  Liu, JS ;  Li, L ;  Li, T ;  Wang, XG ;  Lu, H ;  Wu, TT ;  Zhu, M ;  Ni, PX ;  Han, H ;  Dong, W ;  Ren, XY ;  Feng, XL ;  Cui, P ;  Li, XR ;  Wang, H ;  Xu, X ;  Zhai, WX ;  Xu, Z ;  Zhang, JS ;  He, SJ ;  Zhang, JG ;  Xu, JC ;  Zhang, KL ;  Zheng, XW ;  Dong, JH ;  Zeng, WY ;  Tao, L ;  Ye, J ;  Tan, J ;  Ren, XD ;  Chen, XW ;  He, J ;  Liu, DF ;  Tian, W ;  Tian, CG ;  Xia, HG ;  Bao, QY ;  Li, G ;  Gao, H ;  Cao, T ;  Wang, J ;  Zhao, WM ;  Li, P ;  Chen, W ;  Wang, XD ;  Zhang, Y ;  Hu, JF ;  Wang, J ;  Liu, S ;  Yang, J ;  Zhang, GY ;  Xiong, YQ ;  Li, ZJ ;  Mao, L ;  Zhou, CS ;  Zhu, Z ;  Chen, RS ;  Hao, BL ;  Zheng, WM ;  Chen, SY ;  Guo, W ;  Li, GJ ;  Liu, SQ ;  Tao, M ;  Wang, J ;  Zhu, LH ;  Yuan, LP ;  Yang, HM
刊名: SCIENCE
出版日期: 2002
卷号: 296, 期号:5565, 页码:79-92
关键词: TRANSPOSABLE ELEMENTS ;  ARABIDOPSIS-THALIANA ;  HUMAN GENES ;  COMPARATIVE GENETICS ;  BIALLELIC MARKERS ;  GRASS GENOMES ;  CPG ISLANDS ;  DNA ;  PLANTS ;  IDENTIFICATION
学科分类: Physics
通讯作者: Yuan, LP , Chinese Acad Sci, Inst Genet, Beijing 100101, Peoples R China.
部门归属: Chinese Acad Sci, Inst Genet, Beijing 100101, Peoples R China; Chinese Acad Sci, Beijing Genom Inst, Ctr Genom & Bioinformat, Beijing 101300, Peoples R China; Zhejiang Univ, Hangzhou Genom Inst, Inst Bioinformat, Key Lab Bioinformat Zhejiang Prov, Hangzhou 310007, Peoples R China; Univ Washington, Dept Med, Genome Ctr, Seattle, WA 98195 USA; Peking Univ, Coll Life Sci, Beijing 100871, Peoples R China; Xi An Jiao Tong Univ, Coll Med, Xian 710061, Peoples R China; Fudan Univ, Shanghai 200433, Peoples R China; Natl Hybrid Rice R&D Ctr, Changsha 410125, Peoples R China; Chinese Acad Sci, Inst Biophys, Lab Bioinformat, Beijing 100101, Peoples R China; Digital China Ltd, Beijing 100080, Peoples R China; Chinese Acad Sci, Inst Comp Technol, Beijing 100080, Peoples R China; Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China
英文摘要: We have produced a draft sequence of the rice genome for the most widely cultivated subspecies in China, Oryza sativa L. ssp. indica, by whole-genome shotgun sequencing. The genome was 466 megabases in size, with an estimated 46,022 to 55,615 genes. Functional coverage in the assembled sequences was 92.0%. About 42.2% of the genome was in exact 20-nucleotide oligomer repeats, and most of the transposons were in the intergenic regions between genes. Although 80.6% of predicted Arabidopsis thaliana genes had a homolog in rice, only 49.4% of predicted rice genes had a homolog in A. thaliana. The large proportion of rice genes with no recognizable homologs is due to a gradient in the GC-content of rice coding sequences.
收录类别: SCI
原文出处: 查看原文
WOS记录号: WOS:000174858800038
Citation statistics: 
内容类型: 期刊论文
URI标识: http://ir.itp.ac.cn/handle/311006/13544
Appears in Collections:理论物理所1978-2010年知识产出_期刊论文

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Recommended Citation:
Yu, J,Hu, SN,Wang, J,et al. A draft sequence of the rice genome (Oryza sativa L. ssp indica)[J]. SCIENCE,2002,296(5565):79-92.
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