ITP OpenIR  > 理论物理所1978-2010年知识产出
A draft sequence of the rice (Oryza sativa ssp indica) genome
Yu, J; Hu, SN; Wang, J; Li, SG; Wong, KSG; Liu, B; Deng, Y; Dai, L; Zhou, Y; Zhang, XQ; Cao, ML; Liu, J; Sun, JD; Tang, JB; Chen, YJ; Huang, XB; Lin, W; Ye, C; Tong, W; Cong, LJ; Geng, JN; Han, YJ; Li, L; Li, W; Hu, GQ; Huang, XG; Li, WJ; Li, J; Liu, ZW; Liu, JP; Qi, QH; Liu, JS; Wang, XG; Lu, H; Wu, TT; Zhu, M; Ni, PX; Han, H; Dong, W; Ren, XY; Feng, XL; Cui, P; Li, XR; Wang, H; Xu, X; Zhai, WX; Xu, Z; Zhang, JS; He, SJ; Zhang, JG; Xu, JC; Zhang, KL; Zheng, XW; Dong, JH; Zeng, WY; Tao, L; Chen, XW; He, J; Liu, DF; Tian, W; Tian, CG; Xia, HG; Li, G; Gao, H; Li, P; Chen, W; Wang, XD; Zhang, Y; Hu, JF; Liu, S; Yang, J; Zhang, GY; Xiong, YQ; Li, ZJ; Mao, L; Zhou, CS; Zhu, Z; Chen, RS; Hao, BL; Zheng, WM; Chen, SY; Guo, W; Li, GJ; Liu, SQ; Huang, GY; Tao, M; Zhu, LH; Yuan, LP; Yang, HM; Yang, HM , Chinese Acad Sci, Inst Genet, Beijing 100101, Peoples R China.
2001
发表期刊CHINESE SCIENCE BULLETIN
ISSN1001-6538
卷号46期号:23页码:1937-1942
摘要The sequence of the rice genome holds fundamental information for its biology, including physiology, genetics, development, and evolution, as well as information on many beneficial phenotypes of economic significance. Using a "whole genome shotgun" approach, we have produced a draft rice genome sequence of Oryza sativa ssp. indica, the major crop rice subspecies in China and many other regions of Asia. The draft genome sequence is constructed from over 4.3 million successful sequencing traces with an accumulative total length of 2214.9 Mb. The initial assembly of the non-redundant sequences reached 409.76 Mb in length, based on 3.30 million successful sequencing traces with a total length of 1797.4 Mb from an indica variant cultivar 93-11, giving an estimated coverage of 95.29% of the rice genome with an average base accuracy of higher than 99%. The coverage of the draft sequence, the randomness of the sequence distribution, and the consistency of BIG-ASSEMBLER, a custom-designed software package used for the initial assembly, were verified rigorously by comparisons against finished BAC clone sequences from both indica and japanica strains, available from the public databases. Over all, 96.3% of full-length cDNAs, 96.4% of STS, STR, RFLP markers, 94.0% of ESTs and 94.9% unigene clusters were identified from the draft sequence. Our preliminary analysis on the data set shows that our rice draft sequence is consistent with the comman standard accepted by the genome sequencing community. The unconditional release of the draft to the public also undoubtedly provides a fundamental resource to the international scientific communities to facilitate genomic and genetic studies on rice biology.
部门归属Chinese Acad Sci, Inst Genet, Beijing 100101, Peoples R China; Chinese Acad Sci, Ctr Genom & Bioinformat, Beijing Genom Inst, Beijing 101300, Peoples R China; Zhejiang Univ, Hangzhou Genom Inst, Inst Bioinformat, Key Lab Bioinformat, Hangzhou 310007, Peoples R China; Natl Hybrid Rice R&D Ctr, Changsha 410125, Peoples R China; Chinese Acad Sci, Inst Biophys, Lab Bioinformat, Beijing 100101, Peoples R China; Peking Univ, Coll Life Sci, Beijing 100871, Peoples R China; Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China; Digital China Ltd, Beijing 100080, Peoples R China; Chinese Acad Sci, Inst Comp Technol, Beijing 100080, Peoples R China; Xi An Jiao Tong Univ, Coll Med, Xian 710061, Peoples R China
关键词Dna Construction Library
学科领域Physics
URL查看原文
收录类别SCI
WOS记录号WOS:000173381900001
引用统计
被引频次:20[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.itp.ac.cn/handle/311006/13631
专题理论物理所1978-2010年知识产出
通讯作者Yang, HM , Chinese Acad Sci, Inst Genet, Beijing 100101, Peoples R China.
推荐引用方式
GB/T 7714
Yu, J,Hu, SN,Wang, J,et al. A draft sequence of the rice (Oryza sativa ssp indica) genome[J]. CHINESE SCIENCE BULLETIN,2001,46(23):1937-1942.
APA Yu, J.,Hu, SN.,Wang, J.,Li, SG.,Wong, KSG.,...&Yang, HM , Chinese Acad Sci, Inst Genet, Beijing 100101, Peoples R China..(2001).A draft sequence of the rice (Oryza sativa ssp indica) genome.CHINESE SCIENCE BULLETIN,46(23),1937-1942.
MLA Yu, J,et al."A draft sequence of the rice (Oryza sativa ssp indica) genome".CHINESE SCIENCE BULLETIN 46.23(2001):1937-1942.
条目包含的文件
文件名称/大小 文献类型 版本类型 开放类型 使用许可
A draft sequence of (355KB) 开放获取使用许可请求全文
个性服务
推荐该条目
保存到收藏夹
查看访问统计
导出为Endnote文件
谷歌学术
谷歌学术中相似的文章
[Yu, J]的文章
[Hu, SN]的文章
[Wang, J]的文章
百度学术
百度学术中相似的文章
[Yu, J]的文章
[Hu, SN]的文章
[Wang, J]的文章
必应学术
必应学术中相似的文章
[Yu, J]的文章
[Hu, SN]的文章
[Wang, J]的文章
相关权益政策
暂无数据
收藏/分享
所有评论 (0)
暂无评论
 

除非特别说明,本系统中所有内容都受版权保护,并保留所有权利。