ITP OpenIR  > 理论物理所科研产出  > SCI论文
Li, H; Liu, JS; Xu, Z; Jin, J; Fang, L; Gao, L; Li, YD; Xing, ZX; Gao, SG; Liu, T; Li, HH; Li, Y; Fang, LJ; Xie, HM; Zheng, WM; Hao, BL; Hao, BL , Acad Sinica, Inst Theoret Phys, POB 2735, Beijing 100080, Peoples R China.
Test data sets and evaluation of gene prediction programs on the rice genome
Source PublicationJOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY
KeywordDraft Sequence Dna-sequences Identification Chromosome-4 Japonica Search Models Blast
AbstractWith several rice genome projects approaching completion gene prediction/finding by computer algorithms has become an urgent task. Two test sets were constructed by mapping the newly published 28,469 full-length KOME rice cDNA to the RGP BAC clone sequences of Oryza sativa ssp. japonica: a single-gene set of 550 sequences and a multi-gene set of 62 sequences with 271 genes. These data sets were used to evaluate five ab initio gene prediction programs: RiceHMM, GlimmerR, GeneMark, FGENSH and BGF. The predictions were compared on nucleotide, exon and whole gene structure levels using commonly accepted measures and several new measures. The test results show a progress in performance in chronological order. At the same time complementarity of the programs hints on the possibility of further improvement and on the feasibility of reaching better performance by combining several gene-finders.
2005
ISSN1000-9000
Volume20Issue:4Pages:446-453
Subject AreaPhysics
Indexed BySCI
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Cited Times:10[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.itp.ac.cn/handle/311006/13788
Collection理论物理所科研产出_SCI论文
Corresponding AuthorHao, BL , Acad Sinica, Inst Theoret Phys, POB 2735, Beijing 100080, Peoples R China.
Recommended Citation
GB/T 7714
Li, H,Liu, JS,Xu, Z,et al. Test data sets and evaluation of gene prediction programs on the rice genome[J]. JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY,2005,20(4):446-453.
APA Li, H.,Liu, JS.,Xu, Z.,Jin, J.,Fang, L.,...&Hao, BL , Acad Sinica, Inst Theoret Phys, POB 2735, Beijing 100080, Peoples R China..(2005).Test data sets and evaluation of gene prediction programs on the rice genome.JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY,20(4),446-453.
MLA Li, H,et al."Test data sets and evaluation of gene prediction programs on the rice genome".JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY 20.4(2005):446-453.
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