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A protein structural alphabet and its substitution matrix CLESUM
Zheng, WM; Liu, X; Zheng, WM , Acad Sinica, Inst Theoret Phys, Beijing 100080, Peoples R China.
2005
发表期刊TRANSACTIONS ON COMPUTATIONAL SYSTEMS BIOLOGY II
ISSN0302-9743
卷号3680期号:1页码:59-67
摘要By using a mixture model for the density distribution of the three psendobond angles formed by C-alpha atoms of four consecutive residues, the local structural states are discretized as 17 conformational letters of a protein structural alphabet. This coarse-graining procedure converts a 3D structure to a 1D code sequence. A substitution matrix between these letters is constructed based on the structural alignments of the PSSP database.
部门归属Acad Sinica, Inst Theoret Phys, Beijing 100080, Peoples R China; Acad Sinica, Interdisciplinary Ctr Theoret Studies, Beijing 100080, Peoples R China
关键词Hidden Markov Model Prediction Backbone
学科领域Physics
收录类别SCI
WOS记录号WOS:000234378500004
引用统计
被引频次:10[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.itp.ac.cn/handle/311006/13925
专题理论物理所1978-2010年知识产出
通讯作者Zheng, WM , Acad Sinica, Inst Theoret Phys, Beijing 100080, Peoples R China.
推荐引用方式
GB/T 7714
Zheng, WM,Liu, X,Zheng, WM , Acad Sinica, Inst Theoret Phys, Beijing 100080, Peoples R China.. A protein structural alphabet and its substitution matrix CLESUM[J]. TRANSACTIONS ON COMPUTATIONAL SYSTEMS BIOLOGY II,2005,3680(1):59-67.
APA Zheng, WM,Liu, X,&Zheng, WM , Acad Sinica, Inst Theoret Phys, Beijing 100080, Peoples R China..(2005).A protein structural alphabet and its substitution matrix CLESUM.TRANSACTIONS ON COMPUTATIONAL SYSTEMS BIOLOGY II,3680(1),59-67.
MLA Zheng, WM,et al."A protein structural alphabet and its substitution matrix CLESUM".TRANSACTIONS ON COMPUTATIONAL SYSTEMS BIOLOGY II 3680.1(2005):59-67.
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