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Zheng, WM; Liu, X; Zheng, WM , Acad Sinica, Inst Theoret Phys, Beijing 100080, Peoples R China.
A protein structural alphabet and its substitution matrix CLESUM
Source PublicationTRANSACTIONS ON COMPUTATIONAL SYSTEMS BIOLOGY II
KeywordHidden Markov Model Prediction Backbone
AbstractBy using a mixture model for the density distribution of the three psendobond angles formed by C-alpha atoms of four consecutive residues, the local structural states are discretized as 17 conformational letters of a protein structural alphabet. This coarse-graining procedure converts a 3D structure to a 1D code sequence. A substitution matrix between these letters is constructed based on the structural alignments of the PSSP database.
2005
ISSN0302-9743
Volume3680Issue:1Pages:59-67
Subject AreaPhysics
Indexed BySCI
Citation statistics
Document Type期刊论文
Identifierhttp://ir.itp.ac.cn/handle/311006/13925
Collection理论物理所科研产出_SCI论文
Corresponding AuthorZheng, WM , Acad Sinica, Inst Theoret Phys, Beijing 100080, Peoples R China.
Recommended Citation
GB/T 7714
Zheng, WM,Liu, X,Zheng, WM , Acad Sinica, Inst Theoret Phys, Beijing 100080, Peoples R China.. A protein structural alphabet and its substitution matrix CLESUM[J]. TRANSACTIONS ON COMPUTATIONAL SYSTEMS BIOLOGY II,2005,3680(1):59-67.
APA Zheng, WM,Liu, X,&Zheng, WM , Acad Sinica, Inst Theoret Phys, Beijing 100080, Peoples R China..(2005).A protein structural alphabet and its substitution matrix CLESUM.TRANSACTIONS ON COMPUTATIONAL SYSTEMS BIOLOGY II,3680(1),59-67.
MLA Zheng, WM,et al."A protein structural alphabet and its substitution matrix CLESUM".TRANSACTIONS ON COMPUTATIONAL SYSTEMS BIOLOGY II 3680.1(2005):59-67.
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