Knowledge Management System of Institute of Theoretical Physics, CAS
Zheng, WM ; Liu, X; Zheng, WM , Acad Sinica, Inst Theoret Phys, Beijing 100080, Peoples R China.
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| A protein structural alphabet and its substitution matrix CLESUM | |
| Source Publication | TRANSACTIONS ON COMPUTATIONAL SYSTEMS BIOLOGY II
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| Keyword | Hidden Markov Model Prediction Backbone |
| Abstract | By using a mixture model for the density distribution of the three psendobond angles formed by C-alpha atoms of four consecutive residues, the local structural states are discretized as 17 conformational letters of a protein structural alphabet. This coarse-graining procedure converts a 3D structure to a 1D code sequence. A substitution matrix between these letters is constructed based on the structural alignments of the PSSP database. |
| 2005 | |
| ISSN | 0302-9743 |
| Volume | 3680Issue:1Pages:59-67 |
| Subject Area | Physics |
| Indexed By | SCI |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.itp.ac.cn/handle/311006/13925 |
| Collection | SCI期刊论文 |
| Corresponding Author | Zheng, WM , Acad Sinica, Inst Theoret Phys, Beijing 100080, Peoples R China. |
| Recommended Citation GB/T 7714 | Zheng, WM,Liu, X,Zheng, WM , Acad Sinica, Inst Theoret Phys, Beijing 100080, Peoples R China.. A protein structural alphabet and its substitution matrix CLESUM[J]. TRANSACTIONS ON COMPUTATIONAL SYSTEMS BIOLOGY II,2005,3680(1):59-67. |
| APA | Zheng, WM,Liu, X,&Zheng, WM , Acad Sinica, Inst Theoret Phys, Beijing 100080, Peoples R China..(2005).A protein structural alphabet and its substitution matrix CLESUM.TRANSACTIONS ON COMPUTATIONAL SYSTEMS BIOLOGY II,3680(1),59-67. |
| MLA | Zheng, WM,et al."A protein structural alphabet and its substitution matrix CLESUM".TRANSACTIONS ON COMPUTATIONAL SYSTEMS BIOLOGY II 3680.1(2005):59-67. |
| Files in This Item: | ||||||
| File Name/Size | DocType | Version | Access | License | ||
| A protein structural（152KB） | 开放获取 | License | Application Full Text | |||
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