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题名: Prokaryote phylogeny based on ribosomal proteins and aminoacyl tRNA synthetases by using the compositional distance approach
作者: Wei, HB ;  Qi, J ;  Hao, BL
刊名: SCIENCE IN CHINA SERIES C-LIFE SCIENCES
出版日期: 2004
卷号: 47, 期号:4, 页码:313-321
关键词: METHANOPYRUS-KANDLERI ;  GENE-TRANSFER ;  TREES ;  METHANOGENS ;  GENOME ;  DOMAIN ;  LIFE
学科分类: Physics
通讯作者: Hao, BL , Fudan Univ, T Life Res Ctr, Shanghai 200433, Peoples R China.
部门归属: Fudan Univ, T Life Res Ctr, Shanghai 200433, Peoples R China; Zhejiang Univ, Coll Life Sci, Hangzhou 310027, Peoples R China; Chinese Acad Sci, Beijing Genomics Inst, Hangzhou Branch, Hangzhou 310008, Peoples R China; Acad Sinica, Inst Theoret Phys, Beijing 100080, Peoples R China
英文摘要: In order to show that the newly developed K-string composition distance method, based on counting oligopeptide frequencies, for inferring phylogenetic relations of prokaryotes works equally well without requiring the whole proteome data, we used all ribosomal proteins and the set of aminoacyl tRNA synthetases for each species. The latter group has been known to yield inconsistent trees if used individually. Our trees are obtained without making any sequence alignment. Altogether 16 Archaea, 105 Bacteria and 2 Eucarya are represented on the tree. Most of the lower branchings agree well with the latest, 2003, Outline of the second edition of the Bergey's Manual of Systematic Bacteriology and the trees also suggest some relationships among higher taxa.
收录类别: SCI
原文出处: 查看原文
WOS记录号: WOS:000224138900003
Citation statistics: 
内容类型: 期刊论文
URI标识: http://ir.itp.ac.cn/handle/311006/14037
Appears in Collections:理论物理所1978-2010年知识产出_期刊论文

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Recommended Citation:
Wei, HB,Qi, J,Hao, BL. Prokaryote phylogeny based on ribosomal proteins and aminoacyl tRNA synthetases by using the compositional distance approach[J]. SCIENCE IN CHINA SERIES C-LIFE SCIENCES,2004,47(4):313-321.
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