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Prokaryote phylogeny based on ribosomal proteins and aminoacyl tRNA synthetases by using the compositional distance approach
Wei, HB; Qi, J; Hao, BL; Hao, BL , Fudan Univ, T Life Res Ctr, Shanghai 200433, Peoples R China.
2004
发表期刊SCIENCE IN CHINA SERIES C-LIFE SCIENCES
ISSN1006-9305
卷号47期号:4页码:313-321
摘要In order to show that the newly developed K-string composition distance method, based on counting oligopeptide frequencies, for inferring phylogenetic relations of prokaryotes works equally well without requiring the whole proteome data, we used all ribosomal proteins and the set of aminoacyl tRNA synthetases for each species. The latter group has been known to yield inconsistent trees if used individually. Our trees are obtained without making any sequence alignment. Altogether 16 Archaea, 105 Bacteria and 2 Eucarya are represented on the tree. Most of the lower branchings agree well with the latest, 2003, Outline of the second edition of the Bergey's Manual of Systematic Bacteriology and the trees also suggest some relationships among higher taxa.
部门归属Fudan Univ, T Life Res Ctr, Shanghai 200433, Peoples R China; Zhejiang Univ, Coll Life Sci, Hangzhou 310027, Peoples R China; Chinese Acad Sci, Beijing Genomics Inst, Hangzhou Branch, Hangzhou 310008, Peoples R China; Acad Sinica, Inst Theoret Phys, Beijing 100080, Peoples R China
关键词Methanopyrus-kandleri Gene-transfer Trees Methanogens Genome Domain Life
学科领域Physics
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收录类别SCI
WOS记录号WOS:000224138900003
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被引频次:1[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.itp.ac.cn/handle/311006/14037
专题理论物理所SCI论文
通讯作者Hao, BL , Fudan Univ, T Life Res Ctr, Shanghai 200433, Peoples R China.
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Wei, HB,Qi, J,Hao, BL,et al. Prokaryote phylogeny based on ribosomal proteins and aminoacyl tRNA synthetases by using the compositional distance approach[J]. SCIENCE IN CHINA SERIES C-LIFE SCIENCES,2004,47(4):313-321.
APA Wei, HB,Qi, J,Hao, BL,&Hao, BL , Fudan Univ, T Life Res Ctr, Shanghai 200433, Peoples R China..(2004).Prokaryote phylogeny based on ribosomal proteins and aminoacyl tRNA synthetases by using the compositional distance approach.SCIENCE IN CHINA SERIES C-LIFE SCIENCES,47(4),313-321.
MLA Wei, HB,et al."Prokaryote phylogeny based on ribosomal proteins and aminoacyl tRNA synthetases by using the compositional distance approach".SCIENCE IN CHINA SERIES C-LIFE SCIENCES 47.4(2004):313-321.
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