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Wei, HB; Qi, J; Hao, BL; Hao, BL , Fudan Univ, T Life Res Ctr, Shanghai 200433, Peoples R China.
Prokaryote phylogeny based on ribosomal proteins and aminoacyl tRNA synthetases by using the compositional distance approach
Source PublicationSCIENCE IN CHINA SERIES C-LIFE SCIENCES
KeywordMethanopyrus-kandleri Gene-transfer Trees Methanogens Genome Domain Life
AbstractIn order to show that the newly developed K-string composition distance method, based on counting oligopeptide frequencies, for inferring phylogenetic relations of prokaryotes works equally well without requiring the whole proteome data, we used all ribosomal proteins and the set of aminoacyl tRNA synthetases for each species. The latter group has been known to yield inconsistent trees if used individually. Our trees are obtained without making any sequence alignment. Altogether 16 Archaea, 105 Bacteria and 2 Eucarya are represented on the tree. Most of the lower branchings agree well with the latest, 2003, Outline of the second edition of the Bergey's Manual of Systematic Bacteriology and the trees also suggest some relationships among higher taxa.
2004
ISSN1006-9305
Volume47Issue:4Pages:313-321
Subject AreaPhysics
Indexed BySCI
Citation statistics
Document Type期刊论文
Identifierhttp://ir.itp.ac.cn/handle/311006/14037
Collection理论物理所科研产出_SCI论文
Corresponding AuthorHao, BL , Fudan Univ, T Life Res Ctr, Shanghai 200433, Peoples R China.
Recommended Citation
GB/T 7714
Wei, HB,Qi, J,Hao, BL,et al. Prokaryote phylogeny based on ribosomal proteins and aminoacyl tRNA synthetases by using the compositional distance approach[J]. SCIENCE IN CHINA SERIES C-LIFE SCIENCES,2004,47(4):313-321.
APA Wei, HB,Qi, J,Hao, BL,&Hao, BL , Fudan Univ, T Life Res Ctr, Shanghai 200433, Peoples R China..(2004).Prokaryote phylogeny based on ribosomal proteins and aminoacyl tRNA synthetases by using the compositional distance approach.SCIENCE IN CHINA SERIES C-LIFE SCIENCES,47(4),313-321.
MLA Wei, HB,et al."Prokaryote phylogeny based on ribosomal proteins and aminoacyl tRNA synthetases by using the compositional distance approach".SCIENCE IN CHINA SERIES C-LIFE SCIENCES 47.4(2004):313-321.
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