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Li, Qiang; Xu, Zhao; Hao, Bailin; Hao, BL , Fudan Univ, Dept Phys, T Life Res Ctr, 220 Handan Rd, Shanghai 200433, Peoples R China
Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations
Source PublicationJOURNAL OF BIOTECHNOLOGY
KeywordMolecular Phylogeny Trees Reconstruction Sequences Evolution Taxonomy
AbstractComposition vector approach to prokaryotic phylogeny provides an alignment-free and parameter-free method based on whole-genome data. It has also been applied to viruses and fungi. In all studied cases the inferred phylogenetic relationships agree well with taxonomic knowledge in major groupings and fine branchings. In this review article, after demonstrating its successful application to a collection of 892 genomes including 62 Archaea, 822 Bacteria and 8 Eukarya, we will outline some ongoing work towards the foundations of this new approach. (C) 2009 Elsevier B.V. All rights reserved.
2010
ISSN0168-1656
Volume149Issue:3Pages:115-119
Subject AreaPhysics
Indexed BySCI
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Cited Times:15[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.itp.ac.cn/handle/311006/5050
Collection理论物理所科研产出_SCI论文
Corresponding AuthorHao, BL , Fudan Univ, Dept Phys, T Life Res Ctr, 220 Handan Rd, Shanghai 200433, Peoples R China
Recommended Citation
GB/T 7714
Li, Qiang,Xu, Zhao,Hao, Bailin,et al. Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations[J]. JOURNAL OF BIOTECHNOLOGY,2010,149(3):115-119.
APA Li, Qiang,Xu, Zhao,Hao, Bailin,&Hao, BL , Fudan Univ, Dept Phys, T Life Res Ctr, 220 Handan Rd, Shanghai 200433, Peoples R China.(2010).Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations.JOURNAL OF BIOTECHNOLOGY,149(3),115-119.
MLA Li, Qiang,et al."Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations".JOURNAL OF BIOTECHNOLOGY 149.3(2010):115-119.
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