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Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations
Li, Qiang; Xu, Zhao; Hao, Bailin; Hao, BL , Fudan Univ, Dept Phys, T Life Res Ctr, 220 Handan Rd, Shanghai 200433, Peoples R China
2010
发表期刊JOURNAL OF BIOTECHNOLOGY
ISSN0168-1656
卷号149期号:3页码:115-119
摘要Composition vector approach to prokaryotic phylogeny provides an alignment-free and parameter-free method based on whole-genome data. It has also been applied to viruses and fungi. In all studied cases the inferred phylogenetic relationships agree well with taxonomic knowledge in major groupings and fine branchings. In this review article, after demonstrating its successful application to a collection of 892 genomes including 62 Archaea, 822 Bacteria and 8 Eukarya, we will outline some ongoing work towards the foundations of this new approach. (C) 2009 Elsevier B.V. All rights reserved.
部门归属[Hao, BL] Fudan Univ, Dept Phys, T Life Res Ctr, Shanghai 200433, Peoples R China; [Hao, BL] Acad Sinica, Inst Theoret Phys, Beijing 100190, Peoples R China; [Hao, BL] Santa Fe Inst, Santa Fe, NM 87501 USA
关键词Molecular Phylogeny Trees Reconstruction Sequences Evolution Taxonomy
学科领域Physics
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收录类别SCI
WOS记录号WOS:000281985100003
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文献类型期刊论文
条目标识符http://ir.itp.ac.cn/handle/311006/5050
专题理论物理所SCI论文
通讯作者Hao, BL , Fudan Univ, Dept Phys, T Life Res Ctr, 220 Handan Rd, Shanghai 200433, Peoples R China
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Li, Qiang,Xu, Zhao,Hao, Bailin,et al. Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations[J]. JOURNAL OF BIOTECHNOLOGY,2010,149(3):115-119.
APA Li, Qiang,Xu, Zhao,Hao, Bailin,&Hao, BL , Fudan Univ, Dept Phys, T Life Res Ctr, 220 Handan Rd, Shanghai 200433, Peoples R China.(2010).Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations.JOURNAL OF BIOTECHNOLOGY,149(3),115-119.
MLA Li, Qiang,et al."Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations".JOURNAL OF BIOTECHNOLOGY 149.3(2010):115-119.
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