Knowledge Management System of Institute of Theoretical Physics, CAS
| Sun JianDong; Xu Zhao; Hao BaiLin; Hao, BL , Fudan Univ, Life Res Ctr T, Shanghai 200433, Peoples R China | |
| Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach | |
| Source Publication | CHINESE SCIENCE BULLETIN
 |
| Keyword | Prokaryote Phylogeny Molecular Phylogeny Trees |
| Abstract | The newly proposed alignment-free and parameter-free composition vector (CVtree) method has been successfully applied to infer phylogenetic relationship of viruses, chloroplasts, bacteria, and fungi from their whole-genome data. In this study we pay special attention to the phylogenetic positions of 56 Archaea genomes among which 7 species have not been listed either in Bergey's Manual of Systematic Bacteriology or in Taxonomic Outline of Bacteria and Archaea (TOBA). By inspecting the stable monophyletic branchings in CVTrees reconstructed from a total of 861 genomes (56 Archaea plus 797 Bacteria, using 8 Eukarya as outgroups) definite taxonomic assignments were proposed for these not-fully-classified species. Further development of Archaea taxonomy may verify the predicted phylogenetic results of the CVTree approach. |
| 2010 | |
| ISSN | 1001-6538 |
| Volume | 55Issue:22Pages:2323-2328 |
| Subject Area | Physics |
| Indexed By | SCI |
| Funding Organization | National Basic Research Program of China[2007CB814800]; Shanghai Leading Academic Discipline Project[B111] ; National Basic Research Program of China[2007CB814800]; Shanghai Leading Academic Discipline Project[B111] ; National Basic Research Program of China[2007CB814800]; Shanghai Leading Academic Discipline Project[B111] ; National Basic Research Program of China[2007CB814800]; Shanghai Leading Academic Discipline Project[B111] |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.itp.ac.cn/handle/311006/5070 |
| Collection | 理论物理所科研产出_SCI论文 |
| Corresponding Author | Hao, BL , Fudan Univ, Life Res Ctr T, Shanghai 200433, Peoples R China |
| Recommended Citation GB/T 7714 | Sun JianDong,Xu Zhao,Hao BaiLin,et al. Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach[J]. CHINESE SCIENCE BULLETIN,2010,55(22):2323-2328. |
| APA | Sun JianDong,Xu Zhao,Hao BaiLin,&Hao, BL , Fudan Univ, Life Res Ctr T, Shanghai 200433, Peoples R China.(2010).Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach.CHINESE SCIENCE BULLETIN,55(22),2323-2328. |
| MLA | Sun JianDong,et al."Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach".CHINESE SCIENCE BULLETIN 55.22(2010):2323-2328. |
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