Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach

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	Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach
	Sun JianDong; Xu Zhao; Hao BaiLin; Hao, BL , Fudan Univ, Life Res Ctr T, Shanghai 200433, Peoples R China
	2010
发表期刊	CHINESE SCIENCE BULLETIN
ISSN	1001-6538
卷号	55 期号:22 页码:2323-2328
摘要	The newly proposed alignment-free and parameter-free composition vector (CVtree) method has been successfully applied to infer phylogenetic relationship of viruses, chloroplasts, bacteria, and fungi from their whole-genome data. In this study we pay special attention to the phylogenetic positions of 56 Archaea genomes among which 7 species have not been listed either in Bergey's Manual of Systematic Bacteriology or in Taxonomic Outline of Bacteria and Archaea (TOBA). By inspecting the stable monophyletic branchings in CVTrees reconstructed from a total of 861 genomes (56 Archaea plus 797 Bacteria, using 8 Eukarya as outgroups) definite taxonomic assignments were proposed for these not-fully-classified species. Further development of Archaea taxonomy may verify the predicted phylogenetic results of the CVTree approach.
部门归属	[Sun, JD; Xu, Z; Hao, BL] Fudan Univ, Life Res Ctr T, Shanghai 200433, Peoples R China; [Sun, JD; Xu, Z; Hao, BL] Fudan Univ, Dept Phys, Shanghai 200433, Peoples R China; [Hao, BL] Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China; [Hao, BL] Santa Fe Inst, Santa Fe, NM 87501 USA
关键词	Prokaryote Phylogeny Molecular Phylogeny Trees
学科领域	Physics
资助者	National Basic Research Program of China[2007CB814800]; Shanghai Leading Academic Discipline Project[B111] ; National Basic Research Program of China[2007CB814800]; Shanghai Leading Academic Discipline Project[B111] ; National Basic Research Program of China[2007CB814800]; Shanghai Leading Academic Discipline Project[B111] ; National Basic Research Program of China[2007CB814800]; Shanghai Leading Academic Discipline Project[B111]
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收录类别	SCI
资助者	National Basic Research Program of China[2007CB814800]; Shanghai Leading Academic Discipline Project[B111] ; National Basic Research Program of China[2007CB814800]; Shanghai Leading Academic Discipline Project[B111] ; National Basic Research Program of China[2007CB814800]; Shanghai Leading Academic Discipline Project[B111] ; National Basic Research Program of China[2007CB814800]; Shanghai Leading Academic Discipline Project[B111]
WOS记录号	WOS:000280808100002
引用统计	被引频次：1[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.itp.ac.cn/handle/311006/5070
专题	理论物理所1978-2010年知识产出
通讯作者	Hao, BL , Fudan Univ, Life Res Ctr T, Shanghai 200433, Peoples R China
推荐引用方式 GB/T 7714	Sun JianDong,Xu Zhao,Hao BaiLin,et al. Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach[J]. CHINESE SCIENCE BULLETIN,2010,55(22):2323-2328.
APA	Sun JianDong,Xu Zhao,Hao BaiLin,&Hao, BL , Fudan Univ, Life Res Ctr T, Shanghai 200433, Peoples R China.(2010).Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach.CHINESE SCIENCE BULLETIN,55(22),2323-2328.
MLA	Sun JianDong,et al."Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach".CHINESE SCIENCE BULLETIN 55.22(2010):2323-2328.

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