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题名: Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach
作者: Sun JianDong ;  Xu Zhao ;  Hao BaiLin
刊名: CHINESE SCIENCE BULLETIN
出版日期: 2010
卷号: 55, 期号:22, 页码:2323-2328
关键词: PROKARYOTE PHYLOGENY ;  MOLECULAR PHYLOGENY ;  TREES
学科分类: Physics
通讯作者: Hao, BL , Fudan Univ, Life Res Ctr T, Shanghai 200433, Peoples R China
部门归属: [Sun, JD; Xu, Z; Hao, BL] Fudan Univ, Life Res Ctr T, Shanghai 200433, Peoples R China; [Sun, JD; Xu, Z; Hao, BL] Fudan Univ, Dept Phys, Shanghai 200433, Peoples R China; [Hao, BL] Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China; [Hao, BL] Santa Fe Inst, Santa Fe, NM 87501 USA
英文摘要: The newly proposed alignment-free and parameter-free composition vector (CVtree) method has been successfully applied to infer phylogenetic relationship of viruses, chloroplasts, bacteria, and fungi from their whole-genome data. In this study we pay special attention to the phylogenetic positions of 56 Archaea genomes among which 7 species have not been listed either in Bergey's Manual of Systematic Bacteriology or in Taxonomic Outline of Bacteria and Archaea (TOBA). By inspecting the stable monophyletic branchings in CVTrees reconstructed from a total of 861 genomes (56 Archaea plus 797 Bacteria, using 8 Eukarya as outgroups) definite taxonomic assignments were proposed for these not-fully-classified species. Further development of Archaea taxonomy may verify the predicted phylogenetic results of the CVTree approach.
资助者: National Basic Research Program of China[2007CB814800]; Shanghai Leading Academic Discipline Project[B111]
收录类别: SCI
原文出处: 查看原文
WOS记录号: WOS:000280808100002
Citation statistics: 
内容类型: 期刊论文
URI标识: http://ir.itp.ac.cn/handle/311006/5070
Appears in Collections:理论物理所1978-2010年知识产出_期刊论文

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Recommended Citation:
Sun JianDong,Xu Zhao,Hao BaiLin. Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach[J]. CHINESE SCIENCE BULLETIN,2010,55(22):2323-2328.
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