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Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach
Sun JianDong; Xu Zhao; Hao BaiLin; Hao, BL , Fudan Univ, Life Res Ctr T, Shanghai 200433, Peoples R China
2010
发表期刊CHINESE SCIENCE BULLETIN
ISSN1001-6538
卷号55期号:22页码:2323-2328
摘要The newly proposed alignment-free and parameter-free composition vector (CVtree) method has been successfully applied to infer phylogenetic relationship of viruses, chloroplasts, bacteria, and fungi from their whole-genome data. In this study we pay special attention to the phylogenetic positions of 56 Archaea genomes among which 7 species have not been listed either in Bergey's Manual of Systematic Bacteriology or in Taxonomic Outline of Bacteria and Archaea (TOBA). By inspecting the stable monophyletic branchings in CVTrees reconstructed from a total of 861 genomes (56 Archaea plus 797 Bacteria, using 8 Eukarya as outgroups) definite taxonomic assignments were proposed for these not-fully-classified species. Further development of Archaea taxonomy may verify the predicted phylogenetic results of the CVTree approach.
部门归属[Sun, JD; Xu, Z; Hao, BL] Fudan Univ, Life Res Ctr T, Shanghai 200433, Peoples R China; [Sun, JD; Xu, Z; Hao, BL] Fudan Univ, Dept Phys, Shanghai 200433, Peoples R China; [Hao, BL] Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China; [Hao, BL] Santa Fe Inst, Santa Fe, NM 87501 USA
关键词Prokaryote Phylogeny Molecular Phylogeny Trees
学科领域Physics
资助者National Basic Research Program of China[2007CB814800]; Shanghai Leading Academic Discipline Project[B111] ; National Basic Research Program of China[2007CB814800]; Shanghai Leading Academic Discipline Project[B111] ; National Basic Research Program of China[2007CB814800]; Shanghai Leading Academic Discipline Project[B111] ; National Basic Research Program of China[2007CB814800]; Shanghai Leading Academic Discipline Project[B111]
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收录类别SCI
资助者National Basic Research Program of China[2007CB814800]; Shanghai Leading Academic Discipline Project[B111] ; National Basic Research Program of China[2007CB814800]; Shanghai Leading Academic Discipline Project[B111] ; National Basic Research Program of China[2007CB814800]; Shanghai Leading Academic Discipline Project[B111] ; National Basic Research Program of China[2007CB814800]; Shanghai Leading Academic Discipline Project[B111]
WOS记录号WOS:000280808100002
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被引频次:1[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.itp.ac.cn/handle/311006/5070
专题理论物理所1978-2010年知识产出
通讯作者Hao, BL , Fudan Univ, Life Res Ctr T, Shanghai 200433, Peoples R China
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GB/T 7714
Sun JianDong,Xu Zhao,Hao BaiLin,et al. Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach[J]. CHINESE SCIENCE BULLETIN,2010,55(22):2323-2328.
APA Sun JianDong,Xu Zhao,Hao BaiLin,&Hao, BL , Fudan Univ, Life Res Ctr T, Shanghai 200433, Peoples R China.(2010).Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach.CHINESE SCIENCE BULLETIN,55(22),2323-2328.
MLA Sun JianDong,et al."Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach".CHINESE SCIENCE BULLETIN 55.22(2010):2323-2328.
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