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Prokaryote phylogeny meets taxonomy: An exhaustive comparison of composition vector trees with systematic bacteriology
Gao, Lei; Qi, Ji; Sun, JianDong; Hao, BaiLin; Hao, BL , Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China
2007
发表期刊SCIENCE IN CHINA SERIES C-LIFE SCIENCES
ISSN1006-9305
卷号50期号:5页码:587-599
摘要We perform an exhaustive, taxon by taxon, comparison of the branchings in the composition vector trees (CVTrees) inferred from 432 prokaryotic genomes available on 31,December 2006, with the bacteriologists' taxonomy-primarily the latest online Outline of the Bergey's Manual of Systematic Bacteriology. The CVTree phylogeny agrees very well with the Bergey's taxonomy in majority of fine branchings and overall structures. At the same time most of the differences between the trees and the Manual have been known to biologists to some extent and may hint at taxonomic revisions. Instead of demonstrating the overwhelming agreement this paper puts emphasis on the biological implications of the differences.
部门归属Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China; Fudan Univ, T Life Res Ctr, Shanghai 200433, Peoples R China; Chinese Acad Sci, Beijing Genom Inst, Beijing 101300, Peoples R China; Santa Fe Inst, Santa Fe, NM 87501 USA
关键词Genome Reconstruction Sequence Life Prochlorococcus Evolution
学科领域Physics
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收录类别SCI
WOS记录号WOS:000250583300003
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被引频次:16[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.itp.ac.cn/handle/311006/5648
专题理论物理所1978-2010年知识产出
通讯作者Hao, BL , Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China
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GB/T 7714
Gao, Lei,Qi, Ji,Sun, JianDong,et al. Prokaryote phylogeny meets taxonomy: An exhaustive comparison of composition vector trees with systematic bacteriology[J]. SCIENCE IN CHINA SERIES C-LIFE SCIENCES,2007,50(5):587-599.
APA Gao, Lei,Qi, Ji,Sun, JianDong,Hao, BaiLin,&Hao, BL , Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China.(2007).Prokaryote phylogeny meets taxonomy: An exhaustive comparison of composition vector trees with systematic bacteriology.SCIENCE IN CHINA SERIES C-LIFE SCIENCES,50(5),587-599.
MLA Gao, Lei,et al."Prokaryote phylogeny meets taxonomy: An exhaustive comparison of composition vector trees with systematic bacteriology".SCIENCE IN CHINA SERIES C-LIFE SCIENCES 50.5(2007):587-599.
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