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题名: Decomposition and reconstruction of protein sequences: The problem of uniqueness and factorizable langauge
作者: Shi, Xiaoli ;  Xie, Huimin ;  Zhang, Shuyu ;  Hao, Bailin
刊名: JOURNAL OF THE KOREAN PHYSICAL SOCIETY
出版日期: 2007
卷号: 50, 期号:1, 页码:118-123
学科分类: Physics
通讯作者: Shi, XL , Acad Sinica, Inst Bot, Beijing 100044, Peoples R China
部门归属: Acad Sinica, Inst Bot, Beijing 100044, Peoples R China; Suzhou Univ, Dept Math, Suzhou 215006, Peoples R China; Acad Sinica, Inst Phys, Beijing 100044, Peoples R China; Fudan Univ, T Life Res Ctr, Shanghai 200433, Peoples R China; Acad Sinica, Inst Theoret Phys, Beijing 100044, Peoples R China
英文摘要: In our attempt to justify the CVTree approach of inferring phylogenetic relationship among bacteria from their complete genomes without using sequence alignment, we encountered the problem of the uniqueness of the reconstruction of a protein sequence from its constituent K-peptides, which has a natural relation to a well-understood problem in graph theory, namely, the number of Eulerian loops in a graph. The existence of finite state automata to recognize the uniqueness of a sequence reconstruction provides us with yet another application of factorizable language, which was elucidated at a previous Dynamics Days Asia Pacific meeting (DDAP1).
收录类别: SCI
WOS记录号: WOS:000243481700003
Citation statistics: 
内容类型: 期刊论文
URI标识: http://ir.itp.ac.cn/handle/311006/5805
Appears in Collections:理论物理所1978-2010年知识产出_期刊论文

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Recommended Citation:
Shi, Xiaoli,Xie, Huimin,Zhang, Shuyu,et al. Decomposition and reconstruction of protein sequences: The problem of uniqueness and factorizable langauge[J]. JOURNAL OF THE KOREAN PHYSICAL SOCIETY,2007,50(1):118-123.
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