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Long-range correlations of RNA polymerase II promoter sequences across organisms
Katsaloulis, P; Theoharis, T; Zheng, WM; Hao, BL; Bountis, A; Almirantis, Y; Provata, A; Provata, A , Natl Ctr Sci Res Demokritos, Inst Chem Phys, GR-15310 Athens, Greece
2006
发表期刊PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS
ISSN0378-4371
卷号366期号:1页码:308-322
摘要The statistical properties of the size distribution of DNA segments separating identical oligonucleotides are studied. For representative eukaryotes (Homo sapiens, Mus musculus, Saccharomyces cereviciae, Oryza sativa, Arabidopsis thaliana) we have demonstrated the existence of long-range correlations for the distances separating oligonucleotides of sizes 4, 5 and 6, which carry a promoter signature. This observation is independent of the consensus sequence used by the organism, as in the case of O. sativa (which mainly uses the CG promoter box) and A. thaliana (which mainly uses the TATA promoter box). If we use two parameters to characterise the size distribution separating oligonucleotides, we observe that oligonucleotides containing promoter signatures cluster together, away from the others. (c) 2005 Elsevier B.V. All rights reserved.
部门归属Natl Ctr Sci Res Demokritos, Inst Chem Phys, GR-15310 Athens, Greece; Univ Athens, Dept Informat, Athens 15784, Greece; Acad Sinica, Inst Theoret Phys, Beijing 100080, Peoples R China; Univ Patras, Dept Math, Patras 26500, Greece; Natl Ctr Sci Res Demokritos, Inst Biol, GR-15310 Athens, Greece
关键词Noncoding Dna-sequences Nucleotide-sequences Evolution Genomes
学科领域Physics
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收录类别SCI
WOS记录号WOS:000237955400026
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被引频次:11[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.itp.ac.cn/handle/311006/5958
专题理论物理所1978-2010年知识产出
通讯作者Provata, A , Natl Ctr Sci Res Demokritos, Inst Chem Phys, GR-15310 Athens, Greece
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Katsaloulis, P,Theoharis, T,Zheng, WM,et al. Long-range correlations of RNA polymerase II promoter sequences across organisms[J]. PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS,2006,366(1):308-322.
APA Katsaloulis, P.,Theoharis, T.,Zheng, WM.,Hao, BL.,Bountis, A.,...&Provata, A , Natl Ctr Sci Res Demokritos, Inst Chem Phys, GR-15310 Athens, Greece.(2006).Long-range correlations of RNA polymerase II promoter sequences across organisms.PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS,366(1),308-322.
MLA Katsaloulis, P,et al."Long-range correlations of RNA polymerase II promoter sequences across organisms".PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS 366.1(2006):308-322.
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