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题名: Long-range correlations of RNA polymerase II promoter sequences across organisms
作者: Katsaloulis, P ;  Theoharis, T ;  Zheng, WM ;  Hao, BL ;  Bountis, A ;  Almirantis, Y ;  Provata, A
刊名: PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS
出版日期: 2006
卷号: 366, 期号:1, 页码:308-322
关键词: NONCODING DNA-SEQUENCES ;  NUCLEOTIDE-SEQUENCES ;  EVOLUTION ;  GENOMES
学科分类: Physics
通讯作者: Provata, A , Natl Ctr Sci Res Demokritos, Inst Chem Phys, GR-15310 Athens, Greece
部门归属: Natl Ctr Sci Res Demokritos, Inst Chem Phys, GR-15310 Athens, Greece; Univ Athens, Dept Informat, Athens 15784, Greece; Acad Sinica, Inst Theoret Phys, Beijing 100080, Peoples R China; Univ Patras, Dept Math, Patras 26500, Greece; Natl Ctr Sci Res Demokritos, Inst Biol, GR-15310 Athens, Greece
英文摘要: The statistical properties of the size distribution of DNA segments separating identical oligonucleotides are studied. For representative eukaryotes (Homo sapiens, Mus musculus, Saccharomyces cereviciae, Oryza sativa, Arabidopsis thaliana) we have demonstrated the existence of long-range correlations for the distances separating oligonucleotides of sizes 4, 5 and 6, which carry a promoter signature. This observation is independent of the consensus sequence used by the organism, as in the case of O. sativa (which mainly uses the CG promoter box) and A. thaliana (which mainly uses the TATA promoter box). If we use two parameters to characterise the size distribution separating oligonucleotides, we observe that oligonucleotides containing promoter signatures cluster together, away from the others. (c) 2005 Elsevier B.V. All rights reserved.
收录类别: SCI
原文出处: 查看原文
WOS记录号: WOS:000237955400026
Citation statistics: 
内容类型: 期刊论文
URI标识: http://ir.itp.ac.cn/handle/311006/5958
Appears in Collections:理论物理所1978-2010年知识产出_期刊论文

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Recommended Citation:
Katsaloulis, P,Theoharis, T,Zheng, WM,et al. Long-range correlations of RNA polymerase II promoter sequences across organisms[J]. PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS,2006,366(1):308-322.
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