ITP OpenIR  > 理论物理所1978-2010年知识产出
TreeFam: a curated database of phylogenetic trees of animal gene families
Li, Heng; Coghlan, Avril; Ruan, Jue; Coin, Lachlan James; Heriche, Jean-Karim; Osmotherly, Lara; Li, Ruiqiang; Liu, Tao; Zhang, Zhang; Bolund, Lars; Wong, Gane Ka-Shu; Zheng, Weimou; Dehal, Paramvir; Wang, Jun; Durbin, Richard; Durbin, R , Wellcome Trust Sanger Inst, Wellcome Trust Genome Campus, Cambridge CB10 1SA, England
2006
发表期刊NUCLEIC ACIDS RESEARCH
ISSN0305-1048
卷号34期号:34页码:D572-D580
摘要TreeFam is a database of phylogenetic trees of gene families found in animals. It aims to develop a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments. Curated families are being added progressively, based on seed alignments and trees in a similar fashion to Pfam. Release 1.1 of TreeFam contains curated trees for 690 families 25 and automatically generated trees for another 11 646 families. These represent over 128 000 genes from nine fully sequenced animal genomes and over 45 000 other animal proteins from UniProt; similar to 40 - 85% of proteins encoded in the fully sequenced animal genomes are included in TreeFam. TreeFam is freely available at http://www.treefam.org and http://treefam.genomics.org.cn.
部门归属Wellcome Trust Sanger Inst, Cambridge CB10 1SA, England; Chinese Acad Sci, Beijing Inst Gen, Beijing Gen Inst, Beijing 101300, Peoples R China; Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China; Univ Aarhus, Inst Human Genet, DK-8000 Aarhus C, Denmark; Univ So Denmark, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark; Chinese Acad Sci, Inst Comp Technol, Beijing 100080, Peoples R China; Univ Washington, Dept Med, Genome Ctr, Seattle, WA 98195 USA; Joint Genome Inst, Evolutionary Gen Dept, Dept Energy, Walnut Creek, CA USA; Lawrence Berkeley Lab, Walnut Creek, CA USA
关键词Protein Families Multigene Family Genome Orthologs Phylogenomics Paralogs Duplication Vertebrate Resources Evolution
学科领域Physics
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收录类别SCI
WOS记录号WOS:000239307700123
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被引频次:249[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.itp.ac.cn/handle/311006/6068
专题理论物理所1978-2010年知识产出
通讯作者Durbin, R , Wellcome Trust Sanger Inst, Wellcome Trust Genome Campus, Cambridge CB10 1SA, England
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GB/T 7714
Li, Heng,Coghlan, Avril,Ruan, Jue,et al. TreeFam: a curated database of phylogenetic trees of animal gene families[J]. NUCLEIC ACIDS RESEARCH,2006,34(34):D572-D580.
APA Li, Heng.,Coghlan, Avril.,Ruan, Jue.,Coin, Lachlan James.,Heriche, Jean-Karim.,...&Durbin, R , Wellcome Trust Sanger Inst, Wellcome Trust Genome Campus, Cambridge CB10 1SA, England.(2006).TreeFam: a curated database of phylogenetic trees of animal gene families.NUCLEIC ACIDS RESEARCH,34(34),D572-D580.
MLA Li, Heng,et al."TreeFam: a curated database of phylogenetic trees of animal gene families".NUCLEIC ACIDS RESEARCH 34.34(2006):D572-D580.
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