ITP OpenIR  > 理论物理所科研产出  > SCI论文
Li, Heng; Coghlan, Avril; Ruan, Jue; Coin, Lachlan James; Heriche, Jean-Karim; Osmotherly, Lara; Li, Ruiqiang; Liu, Tao; Zhang, Zhang; Bolund, Lars; Wong, Gane Ka-Shu; Zheng, Weimou; Dehal, Paramvir; Wang, Jun; Durbin, Richard; Durbin, R , Wellcome Trust Sanger Inst, Wellcome Trust Genome Campus, Cambridge CB10 1SA, England
TreeFam: a curated database of phylogenetic trees of animal gene families
Source PublicationNUCLEIC ACIDS RESEARCH
KeywordProtein Families Multigene Family Genome Orthologs Phylogenomics Paralogs Duplication Vertebrate Resources Evolution
AbstractTreeFam is a database of phylogenetic trees of gene families found in animals. It aims to develop a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments. Curated families are being added progressively, based on seed alignments and trees in a similar fashion to Pfam. Release 1.1 of TreeFam contains curated trees for 690 families 25 and automatically generated trees for another 11 646 families. These represent over 128 000 genes from nine fully sequenced animal genomes and over 45 000 other animal proteins from UniProt; similar to 40 - 85% of proteins encoded in the fully sequenced animal genomes are included in TreeFam. TreeFam is freely available at http://www.treefam.org and http://treefam.genomics.org.cn.
2006
ISSN0305-1048
Volume34Issue:34Pages:D572-D580
Subject AreaPhysics
Indexed BySCI
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Document Type期刊论文
Identifierhttp://ir.itp.ac.cn/handle/311006/6068
Collection理论物理所科研产出_SCI论文
Corresponding AuthorDurbin, R , Wellcome Trust Sanger Inst, Wellcome Trust Genome Campus, Cambridge CB10 1SA, England
Recommended Citation
GB/T 7714
Li, Heng,Coghlan, Avril,Ruan, Jue,et al. TreeFam: a curated database of phylogenetic trees of animal gene families[J]. NUCLEIC ACIDS RESEARCH,2006,34(34):D572-D580.
APA Li, Heng.,Coghlan, Avril.,Ruan, Jue.,Coin, Lachlan James.,Heriche, Jean-Karim.,...&Durbin, R , Wellcome Trust Sanger Inst, Wellcome Trust Genome Campus, Cambridge CB10 1SA, England.(2006).TreeFam: a curated database of phylogenetic trees of animal gene families.NUCLEIC ACIDS RESEARCH,34(34),D572-D580.
MLA Li, Heng,et al."TreeFam: a curated database of phylogenetic trees of animal gene families".NUCLEIC ACIDS RESEARCH 34.34(2006):D572-D580.
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