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Quantitative Connection between Cell Size and Growth Rate by Phospholipid Metabolism 期刊论文
CELLS, 2020, 卷号: 9, 期号: 2, 页码: 391
Authors:  Zhang, Zhichao;  Zhang, Qing;  Guan, Shaohua;  Shi, Hualin
Favorite  |  View/Download：37/0  |  Submit date：2020/06/16
HAEMOPHILUS-INFLUENZAE RD  GRAM-NEGATIVE BACTERIA  ESCHERICHIA-COLI  OUTER-MEMBRANE  FATTY-ACID  GUANOSINE TETRAPHOSPHATE  CARDIOLIPIN SYNTHASE  ADAPTIVE EVOLUTION  ENVELOPE  MODEL  
A Decrease in Transcription Capacity Limits Growth Rate upon Translation Inhibition 期刊论文
MSYSTEMS, 2020, 卷号: 5, 期号: 5, 页码: e00575-20
Authors:  Zhang, Qing;  Brambilla, Elisa;  Li, Rui;  Shi, Hualin;  Lagomarsino, Marco Cosentino;  Sclavi, Bianca
Adobe PDF(698Kb)  |  Favorite  |  View/Download：8/0  |  Submit date：2020/11/26
RNA-POLYMERASE AVAILABILITY  ESCHERICHIA-COLI  RIBOSOMAL-RNA  GENE-EXPRESSION  PPGPP  EFFICIENCY  PROMOTERS  SUBUNITS  (P)PPGPP  REVEALS  
Optimal Allocation of Bacterial Protein Resources under Nonlethal Protein Maturation Stress 期刊论文
BIOPHYSICAL JOURNAL, 2018, 卷号: 115, 期号: 5, 页码: 896-910
Authors:  Zhang, Q;  Li, R;  Li, JB;  Shi, HL
Adobe PDF(765Kb)  |  Favorite  |  View/Download：105/0  |  Submit date：2018/12/27
ESCHERICHIA-COLI PROTEOME  SIGMA-FACTOR COMPETITION  GENE-EXPRESSION  RNA-POLYMERASE  OXIDATIVE STRESS  GROWTH-INHIBITION  CELL-GROWTH  TRANSLATION  RATES  OVERPRODUCTION  
Effects of cooperation between translating ribosome and RNA polymerase on termination efficiency of the Rho-independent terminator 期刊论文
NUCLEIC ACIDS RESEARCH, 2016, 卷号: 44, 期号: 6, 页码: 2554-2563
Authors:  Li, R;  Zhang, Q;  Li, JB;  Shi, HL;  Shi, HL (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.;  Li, JB (reprint author), Chinese Acad Sci, Inst Chem, Beijing 100190, Peoples R China.;  Li, JB (reprint author), Natl Ctr Nanosci & Technol, Beijing 100190, Peoples R China.
Adobe PDF(1861Kb)  |  Favorite  |  View/Download：128/2  |  Submit date：2017/10/13
Strategy of tuning gene expression ratio in prokaryotic cell from perspective of noise and correlation 期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2015, 卷号: 365, 期号: 0, 页码: 377-389
Authors:  Li, R;  Xu, LF;  Shi, HL;  Shi, HL (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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Polar Effect  The Two-state Promoter  Transcription Terminator  Gene Expression Correlation  Operon Structure  
Theoretical studies on sRNA-mediated regulation in bacteria 期刊论文
CHINESE PHYSICS B, 2015, 卷号: 24, 期号: 12, 页码: 128703
Authors:  Chang, XX;  Xu, LF;  Shi, HL;  Xu, LF (reprint author), Jilin Univ, Dept Phys, Changchun 130012, Peoples R China.
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Srna-mediated Regulation  Kinetic Model  Crosstalk  
Coupling chromosomal replication to cell growth by the initiator protein DnaA in Escherichia coli 期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2012, 卷号: 314, 期号: -, 页码: 164-172
Authors:  Zhang, Q;  Shi, HL;  Shi, HL (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
Adobe PDF(691Kb)  |  Favorite  |  View/Download：542/33  |  Submit date：2014/04/24
Sequential Binding  Auto-regulation  Division Cycle  Gene Promoter  Adp-dnaa  Origin  Sites  Model  K-12  Seqa  
Quantifying the sequence-function relation in gene silencing by bacterial small RNAs 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 卷号: 108, 期号: 30, 页码: 12473-12478
Authors:  Hao, Y;  Zhang, ZJ;  Erickson, DW;  Huang, M;  Huang, YW;  Li, JB;  Hwa, T;  Shi, HL;  Shi, HL (reprint author), Univ Calif San Diego, Div Biol Sci, Mol Biol Sect, La Jolla, CA 92093 USA.
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Small Regulatory Rnas  Small Noncoding Rnas  Messenger-rna  Escherichia-coli  Binding-sites  Soluble-rna  Translational Initiation  Vibrio-cholerae  Outer-membrane  Hfq-binding  
Theoretical Analysis of Catalytic-sRNA-Mediated Gene Silencing 期刊论文
JOURNAL OF MOLECULAR BIOLOGY, 2011, 卷号: 406, 期号: 1, 页码: 195-204
Authors:  Hao, Y;  Xu, LF;  Shi, HL;  Shi, HL (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.
Adobe PDF(352Kb)  |  Favorite  |  View/Download：217/23  |  Submit date：2013/05/17
Transcriptional Regulation  Escherichia-coli  Regulatory Rnas  Bacteria  Expression  Noise  Consequences  Numbers  Stress  System