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SCI期刊论文 [39]
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Template-based and free modeling of I-TASSER and QUARK pipelines using predicted contact maps in CASP12
期刊论文
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2018, 卷号: 86, 页码: 136-151
Authors:
Zhang, CX
;
Mortuza, SM
;
He, BJ
;
Wang, YT
;
Zhang, Y
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Submit date:2018/12/27
PROTEIN-STRUCTURE PREDICTION
RESIDUE CONTACTS
SEQUENCE
ALIGNMENTS
ACCURACY
NETWORKS
ROLL
Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts
期刊论文
BIOINFORMATICS, 2017, 卷号: 33, 期号: 23, 页码: 3749-3757
Authors:
Zhu, JW
;
Zhang, HC
;
Li, SC
;
Wang, C
;
Kong, LP
;
Sun, SW
;
Zheng, WM
;
Bu, DB
;
Bu, DB (reprint author), Chinese Acad Sci, Inst Comp Technol, Key Lab Intelligent Informat Proc, Beijing 100190, Peoples R China.
;
Zheng, WM (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.
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Submit date:2017/12/21
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis
期刊论文
PLOS GENETICS, 2017, 卷号: 13, 期号: 2, 页码: e1006508
Authors:
Skwark, MJ
;
Croucher, NJ
;
Puranen, S
;
Chewapreecha, C
;
Pesonen, M
;
Xu, YY
;
Turner, P
;
Harris, SR
;
Beres, SB
;
Musser, JM
;
Parkhill, J
;
Bentley, SD
;
Aurell, E
;
Corander, J
;
Corander, J (reprint author), Wellcome Trust Sanger Inst, Pathogen Gen, Cambridge, England.
;
Aurell, E (reprint author), KTH Royal Inst Technol, Dept Computat Biol, Stockholm, Sweden.
;
Aurell, E (reprint author), Aalto Univ, Dept Appl Phys & Comp Sci, Espoo, Finland.
;
Aurell, E (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing, Peoples R China.
;
Corander, J (reprint author), Univ Helsinki, Dept Math & Stat, Helsinki, Finland.
;
Corander, J (reprint author), Univ Oslo, Dept Biostat, Oslo, Norway.
;
Corander, J (reprint author), Univ Cambridge, Dept Vet Med, Cambridge, England.
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Submit date:2017/12/21
NeBcon: protein contact map prediction using neural network training coupled with naiive Bayes classifiers
期刊论文
BIOINFORMATICS, 2017, 卷号: 33, 期号: 15, 页码: 2296-2306
Authors:
He, BJ
;
Mortuza, SM
;
Wang, YT
;
Shen, HB
;
Zhang, Y
;
Zhang, Y (reprint author), Univ Michigan, Dept Computat Med & Bioinformat, Ann Arbor, MI 48109 USA.
;
Zhang, Y (reprint author), Univ Michigan, Dept Biol Chem, Ann Arbor, MI 48109 USA.
Adobe PDF(486Kb)
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Submit date:2017/12/21
Improving residue-residue contact prediction via low-rank and sparse decomposition of residue correlation matrix
期刊论文
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2016, 卷号: 472, 期号: 1, 页码: 217-222
Authors:
Zhang, HC
;
Gao, YJ
;
Deng, MH
;
Wang, C
;
Zhu, JW
;
Li, SC
;
Zheng, WM
;
Bu, DB
;
Bu, DB (reprint author), Chinese Acad Sci, Inst Comp Technol, Key Lab Intelligent Informat Proc, Beijing, Peoples R China.
;
Zheng, WM (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China.
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Submit date:2017/10/13
Protein Contacts Prediction
Correlation Analysis
Background Correlation Removal
Low-rank And Sparse Matrix Decomposition
FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition
期刊论文
BIOINFORMATICS, 2016, 卷号: 32, 期号: 3, 页码: 462-464
Authors:
Wang, C
;
Zhang, HC
;
Zheng, WM
;
Xu, D
;
Zhu, JW
;
Wang, B
;
Ning, K
;
Sun, SW
;
Li, SC
;
Bu, DB
;
Bu, DB (reprint author), Chinese Acad Sci, Inst Comp Technol, Key Lab Intelligent Informat Proc, Beijing, Peoples R China.
;
Li, SC (reprint author), City Univ Hong Kong, Dept Comp Sci, Kowloon, Hong Kong, Peoples R China.
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Submit date:2017/10/13
The significance of anisotropic signals hiding in the Type Ia supernovae
期刊论文
MONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY, 2016, 卷号: 460, 期号: 1, 页码: 617-626
Authors:
Lin, HN
;
Li, X
;
Chang, Z
;
Lin, HN (reprint author), Chongqing Univ, Dept Phys, Chongqing 401331, Peoples R China.
Adobe PDF(2122Kb)
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Submit date:2017/10/13
Supernovae: General
Large-scale Structure Of Universe
The bulk and the tail of minimal absent words in genome sequences
期刊论文
PHYSICAL BIOLOGY, 2016, 卷号: 13, 期号: 2, 页码: 26004
Authors:
Aurell, E
;
Innocenti, N
;
Zhou, HJ
;
Innocenti, N (reprint author), Hebrew Univ Jerusalem, Sch Comp Sci & Engn, IL-91904 Jerusalem, Israel.
Adobe PDF(1879Kb)
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Submit date:2017/10/13
Minimal Absent Words
Copy-mutation Evolution Model
Random Sequence
Reduction of collectivity at very high spins in Nd-134: Expanding the projected-shell-model basis up to 10-quasiparticle states
期刊论文
PHYSICAL REVIEW C, 2016, 卷号: 93, 期号: 3, 页码: 34322
Authors:
Wang, LJ
;
Sun, Y
;
Mizusaki, T
;
Oi, M
;
Ghorui, SK
;
Sun, Y (reprint author), Shanghai Jiao Tong Univ, Dept Phys & Astron, Shanghai 200240, Peoples R China.
;
Sun, Y (reprint author), Shanghai Jiao Tong Univ, Collaborat Innovat Ctr IFSA CICIFSA, Shanghai 200240, Peoples R China.
;
Sun, Y (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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Submit date:2017/10/13
Different nanostructures caused by competition of intra- and inter-beta-sheet interactions in hierarchical self-assembly of short peptides
期刊论文
JOURNAL OF COLLOID AND INTERFACE SCIENCE, 2016, 卷号: 464, 页码: 219-228
Authors:
Zhou, P
;
Deng, L
;
Wang, YT
;
Lu, JR
;
Xu, H
;
Wang, YT (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, 55 East Zhongguancun Road,POB 2735, Beijing 100190, Peoples R China.
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Submit date:2017/10/13
Short Peptides
Self-assembly
Nanostructures
Intermolecular Interactions
Molecular Packing Modes
Molecular Dynamics