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Efficiency of collective myosin II motors studied with an elastic coupling power-stroke ratchet model 期刊论文
CHINESE PHYSICS B, 2018, 卷号: 27, 期号: 12, 页码: 128701
Authors:  Wang, ZQ;  Li, JF;  Xia, YG;  Wang, GD;  Shu, YG
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MECHANICAL EFFICIENCY  MUSCLE-CONTRACTION  WORKING STROKE  FORCE  MOLECULES  STIFFNESS  FIBERS  
Advances in the study of the mechanochemical coupling of kinesin 期刊论文
INTERNATIONAL JOURNAL OF MODERN PHYSICS B, 2018, 卷号: 32, 期号: 18, 页码: 1840001
Authors:  Li, M;  Ou-Yang, ZC;  Shu, YG
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SQUID GIANT-AXON  BOVINE BRAIN KINESIN  HAND-OVER-HAND  CRYSTAL-STRUCTURE  MOTOR DOMAIN  NECK LINKER  8-NM STEP  MOLECULAR MOTORS  OPTICAL-TRAP  FORCE  
Anchor Effect of Interactions Between Kinesin's Nucleotide-Binding Pocket and Microtubule 期刊论文
CELLULAR AND MOLECULAR BIOENGINEERING, 2017, 卷号: 10, 期号: 2, 页码: 162-173
Authors:  Jin, YM;  Geng, YZ;  Lu, LN;  Ma, YL;  Lu, G;  Zhang, H;  Ji, Q;  Geng, YZ (reprint author), Hebei Univ Technol, Sch Sci, Tianjin 300401, Peoples R China.;  Ji, Q (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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Kinesin  Microtubule  Nucleotide-binding Pocket  Anchor Effect  
Mean-field analysis of two-species totally asymmetric simple exclusion process (TASEP) with attachment and detachment 期刊论文
CANADIAN JOURNAL OF PHYSICS, 2017, 卷号: 95, 期号: 4, 页码: 370-380
Authors:  Song, MH;  Zhang, YX;  Zhang, YX (reprint author), Fudan Univ, Sch Math Sci, Ctr Computat Syst Biol, Shanghai Key Lab Contemporary Appl Math, Shanghai 200433, Peoples R China.;  Zhang, YX (reprint author), Chinese Acad Sci, Kavli Inst Theoret Phys China, Beijing 10090, Peoples R China.
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Two-species Tasep  Domain Wall  Boundary Layer  Molecular Motor  Phase Transition  
Advances in the mechanism of mechanochemical coupling of kinesin 期刊论文
ACTA PHYSICA SINICA, 2016, 卷号: 65, 期号: 18, 页码: 188702
Authors:  Li, M;  Ouyang, ZC;  Shu, YG;  Shu, YG (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, Beijing 100049, Peoples R China.;  Shu, YG (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.
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Kinesin  Single Molecule Technology  Mechanochemical Coupling  
F-1-ATPase Stabilizes and Positions Adenosine Triphosphate Revealed by Molecular Dynamics Simulations 期刊论文
ACTA PHYSICO-CHIMICA SINICA, 2015, 卷号: 31, 期号: 9, 页码: 1803-1809
Authors:  Wu, SG;  Gao, XT;  Li, Q;  Liao, J;  Xu, CG;  Wu, SG (reprint author), Sichuan Normal Univ, Coll Chem & Mat Sci, Chengdu 610068, Peoples R China.
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F-1-atpase  Hydrogen Bond  Molecular Dynamics  Mutation  
The neck linker of kinesin 1 seems optimally designed to approach the largest stepping velocity: a simulation study of an ideal model 期刊论文
JOURNAL OF PHYSICS-CONDENSED MATTER, 2012, 卷号: 24, 期号: 3, 页码: 35105
Authors:  Shu, YG;  Zhang, XH;  Ou-Yang, ZC;  Li, M;  Shu, YG (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.
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Hand-over-hand  Microtubule-based Motility  Atp Hydrolysis  Motor Domains  Force-field  Internal Strain  Swing Model  Processivity  Mechanism  Steps  
F0F1-ATPase STATOR REGULATION STUDIED WITH A RESONANCE MODEL 期刊论文
BIODEVICES: PROCEEDINGS OF THE INTERNATIONAL CONFERENCE ON BIOMEDICAL ELECTRONICS AND DEVICES, 2012, 页码: 132-137
Authors:  Shu, YG;  Ou-Yang, ZC;  Shu, YG (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.
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Atp Synthase  Molecular Machine  Proton Transport  F-1-atpase  Rotation  Driven  Mechanism  Kinetics  Motors  
F0F1-ATPase STATOR REGULATION STUDIED WITH A RESONANCE MODEL 会议论文
BIODEVICES: PROCEEDINGS OF THE INTERNATIONAL CONFERENCE ON BIOMEDICAL ELECTRONICS AND DEVICES, PORTUGAL, FEB 01-04, 2012
Authors:  Shu, YG;  Ou-Yang, ZC
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ATP SYNTHESIS  PROTON TRANSPORT  F-1-ATPASE  SYNTHASE  ROTATION  DRIVEN  MECHANISM  KINETICS  
The energy pump and the origin of the non-equilibrium flux of the dynamical systems and the networks 期刊论文
JOURNAL OF CHEMICAL PHYSICS, 2012, 卷号: 136, 期号: 16, 页码: 165102
Authors:  Xu, LF;  Shi, HL;  Feng, HD;  Wang, J;  Xu, LF (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.
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Yeast-cell Cycle  Steady-state Thermodynamics  Funneled Landscape Leads  Mapk Signal-transduction  Chemical-reactions  Dissipation Cost  Gene-expression  Master Equation  Robustness  Fluctuations