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Balanced biosynthesis and trigger threshold resulting in a double adder mechanism of cell size control 期刊论文
COMMUNICATIONS IN THEORETICAL PHYSICS, 2021, 卷号: 73, 期号: 8, 页码: 85601
Authors:  Li, Leilei
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ESCHERICHIA-COLI  CHROMOSOME-REPLICATION  PROTEIN-DEGRADATION  GROWTH  HOMEOSTASIS  DIVISION  INITIATION  CYCLE  ADAPTATION  BACTERIA  
A Decrease in Transcription Capacity Limits Growth Rate upon Translation Inhibition 期刊论文
MSYSTEMS, 2020, 卷号: 5, 期号: 5, 页码: e00575-20
Authors:  Zhang, Qing;  Brambilla, Elisa;  Li, Rui;  Shi, Hualin;  Lagomarsino, Marco Cosentino;  Sclavi, Bianca
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RNA-POLYMERASE AVAILABILITY  ESCHERICHIA-COLI  RIBOSOMAL-RNA  GENE-EXPRESSION  PPGPP  EFFICIENCY  PROMOTERS  SUBUNITS  (P)PPGPP  REVEALS  
Information geometry in the population dynamics of bacteria 期刊论文
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, 2020, 卷号: 2020, 期号: 7, 页码: 73501
Authors:  Zhang, Zihan;  Guan, Shaohua;  Shi, Hualin
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STATISTICAL DISTANCE  CELL-SIZE  THERMODYNAMICS  GROWTH  MODELS  
Cell Size Is Coordinated with Cell Cycle by Regulating Initiator Protein DnaA in E. coli 期刊论文
BIOPHYSICAL JOURNAL, 2020, 卷号: 119, 期号: 12, 页码: 2537-2557
Authors:  Zhang, Qing;  Zhang, Zhichao;  Shi, Hualin
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RATE-DEPENDENT CONTROL  GROWTH-RATE CONTROL  ESCHERICHIA-COLI  REPLICATION INITIATION  CHROMOSOME-REPLICATION  STRINGENT RESPONSE  BACILLUS-SUBTILIS  GENE-EXPRESSION  ATP HYDROLYSIS  DIVISION CYCLE  
Trade-offs between effectiveness and cost in bifunctional enzyme circuit with concentration robustness 期刊论文
PHYSICAL REVIEW E, 2020, 卷号: 101, 期号: 1, 页码: 12409
Authors:  Guan, Shaohua;  Xu, Liufang;  Zhang, Qing;  Shi, Hualin
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CHEMICAL-SYSTEMS  GENE-EXPRESSION  PHOSPHORYLATION  NOISE  ORIGINS  GROWTH  SPEED  OMPR  ATP  
Quantitative Connection between Cell Size and Growth Rate by Phospholipid Metabolism 期刊论文
CELLS, 2020, 卷号: 9, 期号: 2, 页码: 391
Authors:  Zhang, Zhichao;  Zhang, Qing;  Guan, Shaohua;  Shi, Hualin
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HAEMOPHILUS-INFLUENZAE RD  GRAM-NEGATIVE BACTERIA  ESCHERICHIA-COLI  OUTER-MEMBRANE  FATTY-ACID  GUANOSINE TETRAPHOSPHATE  CARDIOLIPIN SYNTHASE  ADAPTIVE EVOLUTION  ENVELOPE  MODEL  
DCA for genome-wide epistasis analysis: the statistical genetics perspective 期刊论文
PHYSICAL BIOLOGY, 2019, 卷号: 16, 期号: 2, 页码: 26002
Authors:  Gao, CY;  Cecconi, F;  Vulpiani, A;  Zhou, HJ;  Aurell, E
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DIRECT-COUPLING ANALYSIS  PROTEIN-STRUCTURE  CONTACTS  HIV  IDENTIFICATION  RECOMBINATION  LINKAGE  LANDSCAPE  INFERENCE  MODEL  
Comparing NMR and X-ray protein structure: Lindemann-like parameters and NMR disorder 期刊论文
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2018, 卷号: 36, 期号: 9, 页码: 2331-2341
Authors:  Faraggi, E;  Dunker, AK;  Sussman, JL;  Kloczkowski, A
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BACKBONE TORSION ANGLES  MAJOR URINARY PROTEIN  INTRINSIC DISORDER  STRUCTURE PREDICTION  SECONDARY STRUCTURE  CRYSTAL-STRUCTURE  DYNAMICS  DIFFRACTION  CRYSTALLOGRAPHY  RECOGNITION  
Optimal Allocation of Bacterial Protein Resources under Nonlethal Protein Maturation Stress 期刊论文
BIOPHYSICAL JOURNAL, 2018, 卷号: 115, 期号: 5, 页码: 896-910
Authors:  Zhang, Q;  Li, R;  Li, JB;  Shi, HL
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ESCHERICHIA-COLI PROTEOME  SIGMA-FACTOR COMPETITION  GENE-EXPRESSION  RNA-POLYMERASE  OXIDATIVE STRESS  GROWTH-INHIBITION  CELL-GROWTH  TRANSLATION  RATES  OVERPRODUCTION  
Anomalous boundary deformation induced by enclosed active particles 期刊论文
CHINESE PHYSICS B, 2017, 卷号: 26, 期号: 10, 页码: 100502
Authors:  Tian, WD;  Gu, Y;  Guo, YK;  Chen, K;  Chen, K (reprint author), Soochow Univ, Coll Phys Optoelect & Energy, Ctr Soft Condensed Matter Phys & Interdisciplinar, Suzhou 215006, Peoples R China.;  Chen, K (reprint author), Chinese Acad Sci, Kavli Inst Theoret Phys China, Beijing 100190, Peoples R China.
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Self-propelled Particles  Boundary  Active Matter  c Onfinement