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SCI期刊论文 [13]
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A Decrease in Transcription Capacity Limits Growth Rate upon Translation Inhibition
期刊论文
MSYSTEMS, 2020, 卷号: 5, 期号: 5, 页码: e00575-20
Authors:
Zhang, Qing
;
Brambilla, Elisa
;
Li, Rui
;
Shi, Hualin
;
Lagomarsino, Marco Cosentino
;
Sclavi, Bianca
Adobe PDF(698Kb)
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View/Download:9/0
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Submit date:2020/11/26
RNA-POLYMERASE AVAILABILITY
ESCHERICHIA-COLI
RIBOSOMAL-RNA
GENE-EXPRESSION
PPGPP
EFFICIENCY
PROMOTERS
SUBUNITS
(P)PPGPP
REVEALS
DCA for genome-wide epistasis analysis: the statistical genetics perspective
期刊论文
PHYSICAL BIOLOGY, 2019, 卷号: 16, 期号: 2, 页码: 26002
Authors:
Gao, CY
;
Cecconi, F
;
Vulpiani, A
;
Zhou, HJ
;
Aurell, E
Adobe PDF(1652Kb)
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View/Download:112/1
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Submit date:2019/07/19
DIRECT-COUPLING ANALYSIS
PROTEIN-STRUCTURE
CONTACTS
HIV
IDENTIFICATION
RECOMBINATION
LINKAGE
LANDSCAPE
INFERENCE
MODEL
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis
期刊论文
PLOS GENETICS, 2017, 卷号: 13, 期号: 2, 页码: e1006508
Authors:
Skwark, MJ
;
Croucher, NJ
;
Puranen, S
;
Chewapreecha, C
;
Pesonen, M
;
Xu, YY
;
Turner, P
;
Harris, SR
;
Beres, SB
;
Musser, JM
;
Parkhill, J
;
Bentley, SD
;
Aurell, E
;
Corander, J
;
Corander, J (reprint author), Wellcome Trust Sanger Inst, Pathogen Gen, Cambridge, England.
;
Aurell, E (reprint author), KTH Royal Inst Technol, Dept Computat Biol, Stockholm, Sweden.
;
Aurell, E (reprint author), Aalto Univ, Dept Appl Phys & Comp Sci, Espoo, Finland.
;
Aurell, E (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing, Peoples R China.
;
Corander, J (reprint author), Univ Helsinki, Dept Math & Stat, Helsinki, Finland.
;
Corander, J (reprint author), Univ Oslo, Dept Biostat, Oslo, Norway.
;
Corander, J (reprint author), Univ Cambridge, Dept Vet Med, Cambridge, England.
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View/Download:146/0
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Submit date:2017/12/21
The bulk and the tail of minimal absent words in genome sequences
期刊论文
PHYSICAL BIOLOGY, 2016, 卷号: 13, 期号: 2, 页码: 26004
Authors:
Aurell, E
;
Innocenti, N
;
Zhou, HJ
;
Innocenti, N (reprint author), Hebrew Univ Jerusalem, Sch Comp Sci & Engn, IL-91904 Jerusalem, Israel.
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Submit date:2017/10/13
Minimal Absent Words
Copy-mutation Evolution Model
Random Sequence
Conditional entropy in variation-adjusted windows detects selection signatures associated with expression quantitative trait loci (eQTLs)
期刊论文
BMC GENOMICS, 2015, 卷号: 16, 期号: 0, 页码: S8
Authors:
Handelman, SK
;
Seweryn, M
;
Smith, RM
;
Hartmann, K
;
Wang, DX
;
Pietrzak, M
;
Johnson, AD
;
Kloczkowski, A
;
Sadee, W
;
Handelman, SK (reprint author), Ohio State Univ, Coll Med, Ctr Pharmacogen, Graves Hall,330 W 10th Ave, Columbus, OH 43210 USA.
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View/Download:107/8
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Submit date:2016/11/21
SNSMIL, a real-time single molecule identification and localization algorithm for super-resolution fluorescence microscopy
期刊论文
SCIENTIFIC REPORTS, 2015, 卷号: 5, 期号: 0, 页码: 11073
Authors:
Tang, YQ
;
Dai, LR
;
Zhang, XM
;
Li, JB
;
Hendriks, JN
;
Fan, XM
;
Gruteser, N
;
Meisenberg, A
;
Baumann, A
;
Katranidis, A
;
Gensch, T
;
Li, JB (reprint author), Natl Ctr Nanosci & Technol China, 11 Beiyitiao Zhongguancun, Beijing 100190, Peoples R China.
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Submit date:2016/11/21
Finite-Size Conformational Transitions: A Unifying Concept Underlying Chromosome Dynamics
期刊论文
COMMUNICATIONS IN THEORETICAL PHYSICS, 2014, 卷号: 62, 期号: 4, 页码: 607-616
Authors:
Care, BR
;
Carrivain, P
;
Forne, T
;
Victor, JM
;
Lesne, A
;
Lesne, A (reprint author), Univ Paris 06, CNRS UMR 7600, Lab Phys Theor Mat Condensee, F-75005 Paris, France.
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View/Download:114/0
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Submit date:2015/06/03
Coil-globule Transition
Polymer-chain
Chromatin
Physics
Organization
Collapse
Locus
Mechano-chemical selections of two competitive unfolding pathways of a single DNA i-motif
期刊论文
CHINESE PHYSICS B, 2014, 卷号: 23, 期号: 6, 页码: 68702
Authors:
Xu, Y
;
Chen, H
;
Qu, YJ
;
Efremov, AK
;
Li, M
;
Ouyang, ZC
;
Liu, DS
;
Yan, J
;
Liu, DS (reprint author), Tsinghua Univ, Minist Educ, Dept Chem, Key Lab Organ Optoelect & Mol Engn, Beijing 100084, Peoples R China.
Adobe PDF(1434Kb)
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Submit date:2015/06/03
G-quadruplex
Mechanical Stability
Rna-polymerase
Stranded-dna
Double Helix
B-dna
Molecule
Force
Proteins
Dynamics
Critical behavior of QED(3) at finite temperature and density
期刊论文
EUROPEAN PHYSICAL JOURNAL C, 2013, 卷号: 73, 期号: 5, 页码: 2444
Authors:
Feng, HT
;
Wang, B
;
Sun, WM
;
Zong, HS
;
Feng, HT (reprint author), SE Univ, Dept Phys, Nanjing 211189, Peoples R China.
Adobe PDF(440Kb)
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Submit date:2014/04/25
Chiral-symmetry Breaking
Quantum Electrodynamics
Fermion Propagator
Mass Generation
Gauge Boson
Qed3
Transition
Polarization
Confinement
Dependence
Quantifying the sequence-function relation in gene silencing by bacterial small RNAs
期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 卷号: 108, 期号: 30, 页码: 12473-12478
Authors:
Hao, Y
;
Zhang, ZJ
;
Erickson, DW
;
Huang, M
;
Huang, YW
;
Li, JB
;
Hwa, T
;
Shi, HL
;
Shi, HL (reprint author), Univ Calif San Diego, Div Biol Sci, Mol Biol Sect, La Jolla, CA 92093 USA.
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Submit date:2013/05/17
Small Regulatory Rnas
Small Noncoding Rnas
Messenger-rna
Escherichia-coli
Binding-sites
Soluble-rna
Translational Initiation
Vibrio-cholerae
Outer-membrane
Hfq-binding