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Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis 期刊论文
PLOS GENETICS, 2017, 卷号: 13, 期号: 2, 页码: e1006508
Authors:  Skwark, MJ;  Croucher, NJ;  Puranen, S;  Chewapreecha, C;  Pesonen, M;  Xu, YY;  Turner, P;  Harris, SR;  Beres, SB;  Musser, JM;  Parkhill, J;  Bentley, SD;  Aurell, E;  Corander, J;  Corander, J (reprint author), Wellcome Trust Sanger Inst, Pathogen Gen, Cambridge, England.;  Aurell, E (reprint author), KTH Royal Inst Technol, Dept Computat Biol, Stockholm, Sweden.;  Aurell, E (reprint author), Aalto Univ, Dept Appl Phys & Comp Sci, Espoo, Finland.;  Aurell, E (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing, Peoples R China.;  Corander, J (reprint author), Univ Helsinki, Dept Math & Stat, Helsinki, Finland.;  Corander, J (reprint author), Univ Oslo, Dept Biostat, Oslo, Norway.;  Corander, J (reprint author), Univ Cambridge, Dept Vet Med, Cambridge, England.
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Reconstructing the dark sector interaction with LISA 期刊论文
JOURNAL OF COSMOLOGY AND ASTROPARTICLE PHYSICS, 2017, 期号: 5, 页码: 31
Authors:  Cai, RG;  Tamanini, N;  Yang, T;  Cai, RG (reprint author), Chinese Acad Sci, Inst Theoret Phys, CAS Key Lab Theoret Phys, POB 2735, Beijing 100190, Peoples R China.;  Cai, RG (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, 19A Yuquan Rd, Beijing 100049, Peoples R China.
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Dark Energy Theory  Gravitational Wave Detectors  Gravitational Waves / Experiments  Supernova Type Ia Standard Candles  
NeBcon: protein contact map prediction using neural network training coupled with naiive Bayes classifiers 期刊论文
BIOINFORMATICS, 2017, 卷号: 33, 期号: 15, 页码: 2296-2306
Authors:  He, BJ;  Mortuza, SM;  Wang, YT;  Shen, HB;  Zhang, Y;  Zhang, Y (reprint author), Univ Michigan, Dept Computat Med & Bioinformat, Ann Arbor, MI 48109 USA.;  Zhang, Y (reprint author), Univ Michigan, Dept Biol Chem, Ann Arbor, MI 48109 USA.
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Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts 期刊论文
BIOINFORMATICS, 2017, 卷号: 33, 期号: 23, 页码: 3749-3757
Authors:  Zhu, JW;  Zhang, HC;  Li, SC;  Wang, C;  Kong, LP;  Sun, SW;  Zheng, WM;  Bu, DB;  Bu, DB (reprint author), Chinese Acad Sci, Inst Comp Technol, Key Lab Intelligent Informat Proc, Beijing 100190, Peoples R China.;  Zheng, WM (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.
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Spike Pattern Structure Influences Synaptic Efficacy Variability under STDP and Synaptic Homeostasis. II: Spike Shuffling Methods on LIF Networks 期刊论文
FRONTIERS IN COMPUTATIONAL NEUROSCIENCE, 2016, 卷号: 10, 页码: 83
Authors:  Bi, ZD;  Zhou, CS;  Bi, ZD (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing, Peoples R China.;  Zhou, CS (reprint author), Hong Kong Baptist Univ, Dept Phys, Kowloon Tong, Hong Kong, Peoples R China.;  Zhou, CS (reprint author), Hong Kong Baptist Univ, Beijing Hong Kong Singapore Joint Ctr Nonlinear &, Ctr Nonlinear Studies, Inst Computat & Theoret Studies, Kowloon Tong, Hong Kong, Peoples R China.;  Zhou, CS (reprint author), Beijing Computat Sci Res Ctr, Beijing, Peoples R China.;  Zhou, CS (reprint author), Hong Kong Baptist Univ, Res Ctr, Inst Res & Continuing Educ, Shenzhen, Peoples R China.
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Spike Pattern Structure  Synaptic Plasticity  Efficacy Variability  Stdp  Synaptic Homeostasis  Spike Shuffling Methods  
Improving residue-residue contact prediction via low-rank and sparse decomposition of residue correlation matrix 期刊论文
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2016, 卷号: 472, 期号: 1, 页码: 217-222
Authors:  Zhang, HC;  Gao, YJ;  Deng, MH;  Wang, C;  Zhu, JW;  Li, SC;  Zheng, WM;  Bu, DB;  Bu, DB (reprint author), Chinese Acad Sci, Inst Comp Technol, Key Lab Intelligent Informat Proc, Beijing, Peoples R China.;  Zheng, WM (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China.
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Protein Contacts Prediction  Correlation Analysis  Background Correlation Removal  Low-rank And Sparse Matrix Decomposition  
Improving residue-residue contact prediction via low-rank and sparse decomposition of residue correlation matrix 期刊论文
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2016, 卷号: 472, 期号: 1, 页码: 217-222
Authors:  Zhang, HC;  Gao, YJ;  Deng, MH;  Wang, C;  Zhu, JW;  Li, SC;  Zheng, WM;  Bu, DB
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Protein contacts prediction  MULTIPLE SEQUENCE ALIGNMENTS  Correlation analysis  COEVOLUTION  Background correlation removal  MUTATIONS  Low-rank and sparse matrix decomposition  PROTEINS  EVOLUTIONARY  INFORMATION  COVARIANCE  SEARCH  
Accurate disulfide-bonding network predictions improve ab initio structure prediction of cysteine-rich proteins 期刊论文
BIOINFORMATICS, 2015, 卷号: 31, 期号: 23, 页码: 3773-3781
Authors:  Yang, J;  He, BJ;  Jang, R;  Zhang, Y;  Shen, HB;  Zhang, Y (reprint author), Univ Michigan, Dept Computat Med & Bioinformat, Ann Arbor, MI 48109 USA.
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Gravitational wave astronomy: the current status 期刊论文
SCIENCE CHINA-PHYSICS MECHANICS & ASTRONOMY, 2015, 卷号: 58, 期号: 12, 页码: 120402
Authors:  Blair, D;  Ju, L;  Zhao, CN;  Wen, LQ;  Chu, Q;  Fang, Q;  Cai, RG;  Gao, JR;  Lin, XC;  Liu, D;  Wu, LA;  Zhu, ZH;  Reitze, DH;  Arai, K;  Zhang, F;  Flaminio, R;  Zhu, XJ;  Hobbs, G;  Manchester, RN;  Shannon, RM;  Baccigalupi, C;  Gao, W;  Xu, P;  Bian, X;  Cao, ZJ;  Chang, ZJ;  Dong, P;  Gong, XF;  Huang, SL;  Ju, P;  Luo, ZR;  Qiang, LE;  Tang, WL;  Wan, XY;  Wang, Y;  Xu, SN;  Zang, YL;  Zhang, HP;  Lau, YK;  Ni, WT;  Blair, D (reprint author), Univ Western Australia, Sch Phys, Crawley, WA 6009, Australia.
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Gravitational Waves  Ground Based Detectors  Pulsar Timing  Spaced Based Detectors  Cmb  
From sparse to dense and from assortative to disassortative in online social networks 期刊论文
SCIENTIFIC REPORTS, 2014, 卷号: 4, 期号: -, 页码: 4861
Authors:  Li, MH;  Guan, SG;  Wu, CS;  Gong, XF;  Li, K;  Wu, JS;  Di, ZR;  Lai, CH;  Guan, SG (reprint author), E China Normal Univ, Dept Phys, Shanghai 200241, Peoples R China.
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Complex Networks  Emergence  Dynamics  Model