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Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 页码: 135
Authors:  Wang, C;  Wei, Y;  Zhang, HC;  Kong, LP;  Sun, SW;  Zheng, WM;  Bu, DB
Favorite  |  View/Download:0/0  |  Submit date:2019/07/19
TERTIARY STRUCTURES  FRAGMENTS  
Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling 会议论文
BMC BIOINFORMATICS, Wuhan, PEOPLES R CHINA, JAN 14-16, 2019
Authors:  Wang, C;  Wei, Y;  Zhang, HC;  Kong, LP;  Sun, SW;  Zheng, WM;  Bu, DB
Favorite  |  View/Download:0/0  |  Submit date:2019/07/24
TERTIARY STRUCTURES  FRAGMENTS  
Thermal properties of a two-dimensional intrinsically curved semiflexible biopolymer 期刊论文
CHINESE PHYSICS B, 2017, 卷号: 26, 期号: 3, 页码: 38701
Authors:  Zhou, ZC;  Wang, YT;  Zhou, ZC (reprint author), Tamkang Univ, Dept Phys, New Taipei, Taiwan.
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Thermal Property  Semiflexible Biopolymer  Intrinsic Curvature  
Anchor Effect of Interactions Between Kinesin's Nucleotide-Binding Pocket and Microtubule 期刊论文
CELLULAR AND MOLECULAR BIOENGINEERING, 2017, 卷号: 10, 期号: 2, 页码: 162-173
Authors:  Jin, YM;  Geng, YZ;  Lu, LN;  Ma, YL;  Lu, G;  Zhang, H;  Ji, Q;  Geng, YZ (reprint author), Hebei Univ Technol, Sch Sci, Tianjin 300401, Peoples R China.;  Ji, Q (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
Adobe PDF(5968Kb)  |  Favorite  |  View/Download:29/4  |  Submit date:2017/12/21
Kinesin  Microtubule  Nucleotide-binding Pocket  Anchor Effect  
Initiation Mechanism of Kinesin's Neck Linker Docking Process 期刊论文
CHINESE PHYSICS LETTERS, 2017, 卷号: 34, 期号: 2, 页码: 28701
Authors:  Geng, YZ;  Zhang, H;  Lyu, G;  Ji, Q;  Ji, Q (reprint author), Hebei Univ Technol, Inst Biophys, Tianjin 300401, Peoples R China.;  Ji, Q (reprint author), Hebei Univ Technol, Sch Sci, Tianjin 300401, Peoples R China.;  Ji, Q (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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Smoothing potential energy surface of proteins by hybrid coarse grained approach 期刊论文
CHINESE PHYSICS B, 2017, 卷号: 26, 期号: 5, 页码: 50202
Authors:  Lu, YK;  Zhou, X;  OuYang, ZC;  Zhou, X (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, Beijing 100049, Peoples R China.
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Coarse-grained  Hybrid Force Field  Enhanced Sampling  Protein Folding  
Stabilities and Dynamics of Protein Folding Nuclei by Molecular Dynamics Simulation 期刊论文
COMMUNICATIONS IN THEORETICAL PHYSICS, 2017, 卷号: 68, 期号: 1, 页码: 137-148
Authors:  Song, YS;  Zhou, X;  Zheng, WM;  Wang, YT;  Wang, YT (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, Beijing 100049, Peoples R China.;  Wang, YT (reprint author), Chinese Acad Sci, Inst Theoret Phys, Key Lab Theoret Phys, Beijing 100190, Peoples R China.
Adobe PDF(6519Kb)  |  Favorite  |  View/Download:41/6  |  Submit date:2017/12/21
Protein Folding  Molecular Dynamics Simulation  Structure Prediction  
Anisotropic formation mechanism and nanomechanics for the self-assembly process of cross-beta peptides 期刊论文
CHINESE PHYSICS B, 2017, 卷号: 26, 期号: 12, 页码: 128701
Authors:  Deng, L;  Zhao, YR;  Zhou, P;  Xu, H;  Wang, YT
Adobe PDF(52289Kb)  |  Favorite  |  View/Download:12/0  |  Submit date:2018/12/26
Steered Molecular-dynamics  Atomic-force Microscopy  Particle Mesh Ewald  Amyloid Fibrils  Free-energy  Intermolecular Forces  Monte-carlo  Nanotubes  Systems  Simulations  
Temperature dependence of DNA condensation at high ionic concentration 期刊论文
MODERN PHYSICS LETTERS B, 2016, 卷号: 30, 期号: 21, 页码: 1650298
Authors:  Mao, W;  Cao, QQ;  Liu, YH;  Fan, YT;  Hu, L;  Xu, HQ;  Liu, YH (reprint author), Guizhou Univ, Coll Sci, Guiyang 550025, Guizhou, Peoples R China.;  Xu, HQ (reprint author), Guizhou Univ, Coll Anim Sci, Minist Educ, Key Lab Anim Genet Breeding & Reprod Plateau Moun, Guiyang 550025, Guizhou, Peoples R China.;  Liu, YH (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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Dna Condensation  Monte Carlo Simulation  Persistence Length  Temperature  
Effects of Ionic Dependence of DNA Persistence Length on the DNA Condensation at Room Temperature 期刊论文
COMMUNICATIONS IN THEORETICAL PHYSICS, 2016, 卷号: 65, 期号: 5, 页码: 639-644
Authors:  Mao, W;  Liu, YH;  Hu, L;  Xu, HQ;  Liu, YH (reprint author), Guizhou Univ, Coll Sci, Guiyang 550025, Peoples R China.;  Liu, YH (reprint author), Guizhou Univ, Coll Anim Sci, Minist Educ, Key Lab Anim Genet Breeding & Reprod Plateau Mt R, Guiyang 550025, Peoples R China.;  Liu, YH (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
Adobe PDF(2113Kb)  |  Favorite  |  View/Download:22/2  |  Submit date:2017/10/13
Dna Condensation  Monte Carlo Simulation  Persistence Length  Multivalent Cation