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Thermal properties of a two-dimensional intrinsically curved semiflexible biopolymer 期刊论文
CHINESE PHYSICS B, 2017, 卷号: 26, 期号: 3, 页码: 38701
Authors:  Zhou, ZC;  Wang, YT;  Zhou, ZC (reprint author), Tamkang Univ, Dept Phys, New Taipei, Taiwan.
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Thermal Property  Semiflexible Biopolymer  Intrinsic Curvature  
Feedback traps for virtual potentials 期刊论文
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, 2017, 卷号: 375, 期号: 2088, 页码: 20160217
Authors:  Gavrilov, M;  Bechhoefer, J;  Bechhoefer, J (reprint author), Simon Fraser Univ, Dept Phys, Burnaby, BC V5A 1S6, Canada.;  Bechhoefer, J (reprint author), Kavli Inst Theoret Phys China CAS, Beijing 100190, Peoples R China.
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Feedback Trap  Information Engine  Landauer Limit  Maxwell Demon  Optimal Control  Stochastic Work  
Molecular dynamics simulation study of the "stay or leave" problem for two magnesium ions in gene transcription 期刊论文
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2017, 卷号: 85, 期号: 6, 页码: 1002-1007
Authors:  Wu, SG;  Wu, SG (reprint author), Sichuan Normal Univ, Coll Chem & Mat Sci, Chengdu 610066, Peoples R China.
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Molecular Dynamics Simulation  T7 Rna Polymerase  Magnesium Ion  Transcription Mechanism  Free Energy  
Mechanism of NTP Binding to the Active Site of T7 RNA Polymerase Revealed by Free-Energy Simulation 期刊论文
BIOPHYSICAL JOURNAL, 2017, 卷号: 112, 期号: 11, 页码: 2253-2260
Authors:  Wu, SG;  Li, LC;  Li, Q;  Wu, SG (reprint author), Sichuan Normal Univ, Coll Chem & Mat Sci, Chengdu, Peoples R China.;  Wu, SG (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing, Peoples R China.
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Temperature dependence of DNA condensation at high ionic concentration 期刊论文
MODERN PHYSICS LETTERS B, 2016, 卷号: 30, 期号: 21, 页码: 1650298
Authors:  Mao, W;  Cao, QQ;  Liu, YH;  Fan, YT;  Hu, L;  Xu, HQ;  Liu, YH (reprint author), Guizhou Univ, Coll Sci, Guiyang 550025, Guizhou, Peoples R China.;  Xu, HQ (reprint author), Guizhou Univ, Coll Anim Sci, Minist Educ, Key Lab Anim Genet Breeding & Reprod Plateau Moun, Guiyang 550025, Guizhou, Peoples R China.;  Liu, YH (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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Dna Condensation  Monte Carlo Simulation  Persistence Length  Temperature  
Free Energy Calculation for Base Pair Dissociation in a DNA Duplex 期刊论文
ACTA PHYSICO-CHIMICA SINICA, 2016, 卷号: 32, 期号: 5, 页码: 1282-1288
Authors:  Wu, SG;  Feng, D;  Wu, SG (reprint author), Sichuan Normal Univ, Coll Chem & Mat Sci, Chengdu 610068, Peoples R China.;  Wu, SG (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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Potential Of Mean Force  Hydrogen Bond  Molecular Dynamics Simulation  Umbrella Sampling  
Different nanostructures caused by competition of intra- and inter-beta-sheet interactions in hierarchical self-assembly of short peptides 期刊论文
JOURNAL OF COLLOID AND INTERFACE SCIENCE, 2016, 卷号: 464, 页码: 219-228
Authors:  Zhou, P;  Deng, L;  Wang, YT;  Lu, JR;  Xu, H;  Wang, YT (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, 55 East Zhongguancun Road,POB 2735, Beijing 100190, Peoples R China.
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Short Peptides  Self-assembly  Nanostructures  Intermolecular Interactions  Molecular Packing Modes  Molecular Dynamics  
Effects of cooperation between translating ribosome and RNA polymerase on termination efficiency of the Rho-independent terminator 期刊论文
NUCLEIC ACIDS RESEARCH, 2016, 卷号: 44, 期号: 6, 页码: 2554-2563
Authors:  Li, R;  Zhang, Q;  Li, JB;  Shi, HL;  Shi, HL (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.;  Li, JB (reprint author), Chinese Acad Sci, Inst Chem, Beijing 100190, Peoples R China.;  Li, JB (reprint author), Natl Ctr Nanosci & Technol, Beijing 100190, Peoples R China.
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Mechanism of pyrophosphate ion release in T7 RNA polymerase revealed by free energy simulations 期刊论文
COMPUTATIONAL AND THEORETICAL CHEMISTRY, 2016, 卷号: 1094, 页码: 127-132
Authors:  Wu, SG;  Jiang, MQ;  Liu, L;  Wu, SG (reprint author), Sichuan Normal Univ, Coll Chem & Mat Sci, Chengdu 610068, Peoples R China.
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Molecular Dynamics Simulation  T7 Rna Polymerase  Ppi Release  Potential Of Mean Force  
SNSMIL, a real-time single molecule identification and localization algorithm for super-resolution fluorescence microscopy 期刊论文
SCIENTIFIC REPORTS, 2015, 卷号: 5, 期号: 0, 页码: 11073
Authors:  Tang, YQ;  Dai, LR;  Zhang, XM;  Li, JB;  Hendriks, JN;  Fan, XM;  Gruteser, N;  Meisenberg, A;  Baumann, A;  Katranidis, A;  Gensch, T;  Li, JB (reprint author), Natl Ctr Nanosci & Technol China, 11 Beiyitiao Zhongguancun, Beijing 100190, Peoples R China.
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