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Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis 期刊论文
PLOS GENETICS, 2017, 卷号: 13, 期号: 2, 页码: e1006508
Authors:  Skwark, MJ;  Croucher, NJ;  Puranen, S;  Chewapreecha, C;  Pesonen, M;  Xu, YY;  Turner, P;  Harris, SR;  Beres, SB;  Musser, JM;  Parkhill, J;  Bentley, SD;  Aurell, E;  Corander, J;  Corander, J (reprint author), Wellcome Trust Sanger Inst, Pathogen Gen, Cambridge, England.;  Aurell, E (reprint author), KTH Royal Inst Technol, Dept Computat Biol, Stockholm, Sweden.;  Aurell, E (reprint author), Aalto Univ, Dept Appl Phys & Comp Sci, Espoo, Finland.;  Aurell, E (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing, Peoples R China.;  Corander, J (reprint author), Univ Helsinki, Dept Math & Stat, Helsinki, Finland.;  Corander, J (reprint author), Univ Oslo, Dept Biostat, Oslo, Norway.;  Corander, J (reprint author), Univ Cambridge, Dept Vet Med, Cambridge, England.
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NeBcon: protein contact map prediction using neural network training coupled with naiive Bayes classifiers 期刊论文
BIOINFORMATICS, 2017, 卷号: 33, 期号: 15, 页码: 2296-2306
Authors:  He, BJ;  Mortuza, SM;  Wang, YT;  Shen, HB;  Zhang, Y;  Zhang, Y (reprint author), Univ Michigan, Dept Computat Med & Bioinformat, Ann Arbor, MI 48109 USA.;  Zhang, Y (reprint author), Univ Michigan, Dept Biol Chem, Ann Arbor, MI 48109 USA.
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Improving prediction of burial state of residues by exploiting correlation among residues 期刊论文
BMC BIOINFORMATICS, 2017, 卷号: 18, 页码: 70
Authors:  Gong, HE;  Zhang, HC;  Zhu, JW;  Wang, C;  Sun, SW;  Zheng, WM;  Bu, DB;  Bu, DB (reprint author), Chinese Acad Sci, Inst Comp Technol, Key Lab Intelligent Proc, Beijing 100190, Peoples R China.;  Zheng, WM (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.
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Protein Structure  Burial States Of Residue  Conditional Random Field  Residue Correlation  
Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts 期刊论文
BIOINFORMATICS, 2017, 卷号: 33, 期号: 23, 页码: 3749-3757
Authors:  Zhu, JW;  Zhang, HC;  Li, SC;  Wang, C;  Kong, LP;  Sun, SW;  Zheng, WM;  Bu, DB;  Bu, DB (reprint author), Chinese Acad Sci, Inst Comp Technol, Key Lab Intelligent Informat Proc, Beijing 100190, Peoples R China.;  Zheng, WM (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.
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Accurate disulfide-bonding network predictions improve ab initio structure prediction of cysteine-rich proteins 期刊论文
BIOINFORMATICS, 2015, 卷号: 31, 期号: 23, 页码: 3773-3781
Authors:  Yang, J;  He, BJ;  Jang, R;  Zhang, Y;  Shen, HB;  Zhang, Y (reprint author), Univ Michigan, Dept Computat Med & Bioinformat, Ann Arbor, MI 48109 USA.
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Proteins: From sequence to structure 期刊论文
CHINESE PHYSICS B, 2014, 卷号: 23, 期号: 7, 页码: 78705
Authors:  Zheng, WM;  Zheng, WM (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.
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Peptide-fragments  Structure Prediction  Homology Detection  Globular-proteins  Families Database  Initiation  Propensities  Coevolution  Models  Server  
CLEMAPS: Multiple alignment of protein structures based on conformational letters 期刊论文
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2008, 卷号: 71, 期号: 2, 页码: 728-736
Authors:  Liu, Xin;  Zhao, Ya-Pu;  Zheng, Wei-Mou;  Zheng, WM , Acad Sinica, Inst Theoret Phys, Beijing 100080, Peoples R China
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Substitution Matrix  Algorithm  Database  Classification  Similarities  Backbone  Families  
DRTF: a database of rice transcription factors 期刊论文
BIOINFORMATICS, 2006, 卷号: 22, 期号: 10, 页码: 1286-1287
Authors:  Gao, G;  Zhong, YF;  Guo, AY;  Zhu, QH;  Tang, W;  Zheng, WM;  Gu, XC;  Wei, LP;  Luo, JC;  Wei, LP , Peking Univ, Ctr Bioinformat, Natl Lab Prot Engn & Plant Genet Engn, Coll Life Sci, Beijing 100871, Peoples R China
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Wide Comparative-analysis  Sequence Database  Information  Resource  Families  
TreeFam: a curated database of phylogenetic trees of animal gene families 期刊论文
NUCLEIC ACIDS RESEARCH, 2006, 卷号: 34, 期号: 34, 页码: D572-D580
Authors:  Li, Heng;  Coghlan, Avril;  Ruan, Jue;  Coin, Lachlan James;  Heriche, Jean-Karim;  Osmotherly, Lara;  Li, Ruiqiang;  Liu, Tao;  Zhang, Zhang;  Bolund, Lars;  Wong, Gane Ka-Shu;  Zheng, Weimou;  Dehal, Paramvir;  Wang, Jun;  Durbin, Richard;  Durbin, R , Wellcome Trust Sanger Inst, Wellcome Trust Genome Campus, Cambridge CB10 1SA, England
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Protein Families  Multigene Family  Genome  Orthologs  Phylogenomics  Paralogs  Duplication  Vertebrate  Resources  Evolution