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Optimal Allocation of Bacterial Protein Resources under Nonlethal Protein Maturation Stress 期刊论文
BIOPHYSICAL JOURNAL, 2018, 卷号: 115, 期号: 5, 页码: 896-910
Authors:  Zhang, Q;  Li, R;  Li, JB;  Shi, HL
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ESCHERICHIA-COLI PROTEOME  SIGMA-FACTOR COMPETITION  GENE-EXPRESSION  RNA-POLYMERASE  OXIDATIVE STRESS  GROWTH-INHIBITION  CELL-GROWTH  TRANSLATION  RATES  OVERPRODUCTION  
Proofreading of DNA polymerase: a new kinetic model with higher-order terminal effects 期刊论文
JOURNAL OF PHYSICS-CONDENSED MATTER, 2017, 卷号: 29, 期号: 2, 页码: 25101
Authors:  Song, YS;  Shu, YG;  Zhou, X;  Ou-Yang, ZC;  Li, M;  Li, M (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, 19A Yuquan Rd, Beijing 100049, Peoples R China.
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Dna Polymerase  Proofreading  Kinetics  Fidelity  Higher-order Terminal Effects  
Mean-field analysis of two-species totally asymmetric simple exclusion process (TASEP) with attachment and detachment 期刊论文
CANADIAN JOURNAL OF PHYSICS, 2017, 卷号: 95, 期号: 4, 页码: 370-380
Authors:  Song, MH;  Zhang, YX;  Zhang, YX (reprint author), Fudan Univ, Sch Math Sci, Ctr Computat Syst Biol, Shanghai Key Lab Contemporary Appl Math, Shanghai 200433, Peoples R China.;  Zhang, YX (reprint author), Chinese Acad Sci, Kavli Inst Theoret Phys China, Beijing 10090, Peoples R China.
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Two-species Tasep  Domain Wall  Boundary Layer  Molecular Motor  Phase Transition  
Mechanism of NTP Binding to the Active Site of T7 RNA Polymerase Revealed by Free-Energy Simulation 期刊论文
BIOPHYSICAL JOURNAL, 2017, 卷号: 112, 期号: 11, 页码: 2253-2260
Authors:  Wu, SG;  Li, LC;  Li, Q;  Wu, SG (reprint author), Sichuan Normal Univ, Coll Chem & Mat Sci, Chengdu, Peoples R China.;  Wu, SG (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing, Peoples R China.
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Behavioural effect of low-dose BPA on male zebrafish: Tuning of male mating competition and female mating preference during courtship process 期刊论文
CHEMOSPHERE, 2017, 卷号: 169, 页码: 40-52
Authors:  Li, X;  Guo, JY;  Zhou, HJ;  Zhang, SH;  Liu, XD;  Chen, DY;  Fang, YC;  Feng, XZ;  Feng, XZ (reprint author), Nankai Univ, Coll Life Sci, State Key Lab Med Chem Biol, Key Lab Bioact Mat,Minist Educ, Tianjin 300071, Peoples R China.;  Fang, YC (reprint author), Nankai Univ, Tianjin Key Lab Intelligent Robot, Inst Robot & Automat Informat Syst, Tianjin 300071, Peoples R China.;  Chen, DY (reprint author), Nankai Univ, Tianjin Key Lab Tumor Microenvironm & Neurovasc R, Sch Med, Dept Histol & Embryol, Tianjin 300071, Peoples R China.
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Low-dose Bisphenol a  Zebrafish  Courtship  Behavior  
Feedback arcs and node hierarchy in directed networks 期刊论文
CHINESE PHYSICS B, 2017, 卷号: 26, 期号: 7, 页码: 78901
Authors:  Zhao, JH;  Zhou, HJ;  Zhou, HJ (reprint author), Chinese Acad Sci, Inst Theoret Phys, Key Lab Theoret Phys, Beijing 100190, Peoples R China.;  Zhou, HJ (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, Beijing 100049, Peoples R China.
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Directed Graph  Feedback Arc  Hierarchy  Message-passing Algorithm  
Optimal Segmentation of Directed Graph and the Minimum Number of Feedback Arcs 期刊论文
JOURNAL OF STATISTICAL PHYSICS, 2017, 卷号: 169, 期号: 1, 页码: 187-202
Authors:  Xu, YZ;  Zhou, HJ;  Zhou, HJ (reprint author), Chinese Acad Sci, Inst Theoret Phys, Key Lab Theoret Phys, Zhong Guan Cun East Rd 55, Beijing 100190, Peoples R China.;  Zhou, HJ (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, Beijing 100049, Peoples R China.
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Feedback Arc Set  Directed Cycle  Replica-symmetric  Belief Propagation  Segmentation  Mean Field Theory  Algorithm  
Data quality for the inverse Ising problem 期刊论文
JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL, 2016, 卷号: 49, 期号: 38, 页码: 384001
Authors:  Decelle, A;  Ricci-Tersenghi, F;  Zhang, P;  Ricci-Tersenghi, F (reprint author), Univ Roma La Sapienza, Dipartimento Fis, Ist Nazl Fis Nucl, Sez Roma1, Piazzale Aldo Moro 5, I-00185 Rome, Italy.;  Ricci-Tersenghi, F (reprint author), Univ Roma La Sapienza, CNR Nanotec, I-00185 Rome, Italy.
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Statistical Inference  Inverse Ising Problem  Big Data  Parallel Dynamics  Effective Rank  
A New Self-Consistent Field Model of Polymer/Nanoparticle Mixture 期刊论文
SCIENTIFIC REPORTS, 2016, 卷号: 6, 页码: 20355
Authors:  Chen, K;  Li, HS;  Zhang, BK;  Li, J;  Tian, WD;  Tian, WD (reprint author), Soochow Univ, Coll Phys Optoelect & Energy, Ctr Soft Condensed Matter Phys & Interdisciplinar, Suzhou 215006, Peoples R China.;  Tian, WD (reprint author), Chinese Acad Sci, Kavli Inst Theoret Phys China, Beijing 100190, Peoples R China.
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Effects of cooperation between translating ribosome and RNA polymerase on termination efficiency of the Rho-independent terminator 期刊论文
NUCLEIC ACIDS RESEARCH, 2016, 卷号: 44, 期号: 6, 页码: 2554-2563
Authors:  Li, R;  Zhang, Q;  Li, JB;  Shi, HL;  Shi, HL (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.;  Li, JB (reprint author), Chinese Acad Sci, Inst Chem, Beijing 100190, Peoples R China.;  Li, JB (reprint author), Natl Ctr Nanosci & Technol, Beijing 100190, Peoples R China.
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