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Kinetic assays of DNA polymerase fidelity: A theoretical perspective beyond Michaelis-Menten kinetics 期刊论文
PHYSICAL REVIEW E, 2021, 卷号: 104, 期号: 1, 页码: 14408
Authors:  Li, Qiu-Shi;  Shu, Yao-Gen;  Ou-Yang, Zhong-Can;  Li, Ming
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NUCLEOTIDE INCORPORATION  CONFORMATIONAL-CHANGES  SPONTANEOUS MUTATION  TRANSLOCATION STEP  MECHANISM  REPLICATION  EXONUCLEASE  SELECTION  DYNAMICS  BINDING  
A Decrease in Transcription Capacity Limits Growth Rate upon Translation Inhibition 期刊论文
MSYSTEMS, 2020, 卷号: 5, 期号: 5, 页码: e00575-20
Authors:  Zhang, Qing;  Brambilla, Elisa;  Li, Rui;  Shi, Hualin;  Lagomarsino, Marco Cosentino;  Sclavi, Bianca
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RNA-POLYMERASE AVAILABILITY  ESCHERICHIA-COLI  RIBOSOMAL-RNA  GENE-EXPRESSION  PPGPP  EFFICIENCY  PROMOTERS  SUBUNITS  (P)PPGPP  REVEALS  
Bridging chains mediate nonlinear mechanics of polymer nanocomposites under cyclic deformation 期刊论文
POLYMER, 2020, 卷号: 200, 页码: 122529
Authors:  Varol, H. Samet;  Srivastava, Anchit;  Kumar, Sachin;  Bonn, Mischa;  Meng, Fanlong;  Parekh, Sapun H.
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REINFORCEMENT  ELASTOMERS  MODEL  SOFT  SIZE  
Cell Size Is Coordinated with Cell Cycle by Regulating Initiator Protein DnaA in E. coli 期刊论文
BIOPHYSICAL JOURNAL, 2020, 卷号: 119, 期号: 12, 页码: 2537-2557
Authors:  Zhang, Qing;  Zhang, Zhichao;  Shi, Hualin
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RATE-DEPENDENT CONTROL  GROWTH-RATE CONTROL  ESCHERICHIA-COLI  REPLICATION INITIATION  CHROMOSOME-REPLICATION  STRINGENT RESPONSE  BACILLUS-SUBTILIS  GENE-EXPRESSION  ATP HYDROLYSIS  DIVISION CYCLE  
Trade-offs between effectiveness and cost in bifunctional enzyme circuit with concentration robustness 期刊论文
PHYSICAL REVIEW E, 2020, 卷号: 101, 期号: 1, 页码: 12409
Authors:  Guan, Shaohua;  Xu, Liufang;  Zhang, Qing;  Shi, Hualin
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CHEMICAL-SYSTEMS  GENE-EXPRESSION  PHOSPHORYLATION  NOISE  ORIGINS  GROWTH  SPEED  OMPR  ATP  
Fast and accurate determination of phase transition temperature via individual generalized canonical ensemble simulation 期刊论文
CHINESE PHYSICS B, 2020, 卷号: 29, 期号: 8, 页码: 80505
Authors:  Shao, Ming-Zhe;  Wang, Yan-Ting;  Zhou, Xin
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MOLECULAR-DYNAMICS SIMULATION  POTENTIAL MODEL  WATER  ICE  CRYSTALLIZATION  INTERFACE  
Quantitative Connection between Cell Size and Growth Rate by Phospholipid Metabolism 期刊论文
CELLS, 2020, 卷号: 9, 期号: 2, 页码: 391
Authors:  Zhang, Zhichao;  Zhang, Qing;  Guan, Shaohua;  Shi, Hualin
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HAEMOPHILUS-INFLUENZAE RD  GRAM-NEGATIVE BACTERIA  ESCHERICHIA-COLI  OUTER-MEMBRANE  FATTY-ACID  GUANOSINE TETRAPHOSPHATE  CARDIOLIPIN SYNTHASE  ADAPTIVE EVOLUTION  ENVELOPE  MODEL  
The wavefunction reconstruction effects in calculation of DM-induced electronic transition in semiconductor targets 期刊论文
JOURNAL OF HIGH ENERGY PHYSICS, 2019, 期号: 1, 页码: 149
Authors:  Liang, ZL;  Zhang, L;  Zhang, P;  Zheng, FW
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DARK-MATTER  PSEUDOPOTENTIALS  
DCA for genome-wide epistasis analysis: the statistical genetics perspective 期刊论文
PHYSICAL BIOLOGY, 2019, 卷号: 16, 期号: 2, 页码: 26002
Authors:  Gao, CY;  Cecconi, F;  Vulpiani, A;  Zhou, HJ;  Aurell, E
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DIRECT-COUPLING ANALYSIS  PROTEIN-STRUCTURE  CONTACTS  HIV  IDENTIFICATION  RECOMBINATION  LINKAGE  LANDSCAPE  INFERENCE  MODEL  
Defect Removal by Solvent Vapor Annealing in Thin Films of Lamellar Diblock Copolymers 期刊论文
MACROMOLECULES, 2019, 卷号: 52, 期号: 23, 页码: 9321-9333
Authors:  Xu, Xinpeng;  Man, Xingkun;  Doi, Masao;  Ou-Yang, Zhong-can;  Andelman, David
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BLOCK POLYMER-SOLUTIONS  PHASE-SEPARATION  DILUTION APPROXIMATION  ORDERED STRUCTURE  ANNIHILATION  ORIENTATION  EVAPORATION  SIMULATION  DYNAMICS  KINETICS