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DCA for genome-wide epistasis analysis: the statistical genetics perspective 期刊论文
PHYSICAL BIOLOGY, 2019, 卷号: 16, 期号: 2, 页码: 26002
Authors:  Gao, CY;  Cecconi, F;  Vulpiani, A;  Zhou, HJ;  Aurell, E
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DIRECT-COUPLING ANALYSIS  PROTEIN-STRUCTURE  CONTACTS  HIV  IDENTIFICATION  RECOMBINATION  LINKAGE  LANDSCAPE  INFERENCE  MODEL  
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis 期刊论文
PLOS GENETICS, 2017, 卷号: 13, 期号: 2, 页码: e1006508
Authors:  Skwark, MJ;  Croucher, NJ;  Puranen, S;  Chewapreecha, C;  Pesonen, M;  Xu, YY;  Turner, P;  Harris, SR;  Beres, SB;  Musser, JM;  Parkhill, J;  Bentley, SD;  Aurell, E;  Corander, J;  Corander, J (reprint author), Wellcome Trust Sanger Inst, Pathogen Gen, Cambridge, England.;  Aurell, E (reprint author), KTH Royal Inst Technol, Dept Computat Biol, Stockholm, Sweden.;  Aurell, E (reprint author), Aalto Univ, Dept Appl Phys & Comp Sci, Espoo, Finland.;  Aurell, E (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing, Peoples R China.;  Corander, J (reprint author), Univ Helsinki, Dept Math & Stat, Helsinki, Finland.;  Corander, J (reprint author), Univ Oslo, Dept Biostat, Oslo, Norway.;  Corander, J (reprint author), Univ Cambridge, Dept Vet Med, Cambridge, England.
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Universality of maximum-work efficiency of a cyclic heat engine based on a finite system of ultracold atoms 期刊论文
SCIENTIFIC REPORTS, 2017, 卷号: 7, 页码: 6289
Authors:  Ye, ZL;  Hu, YY;  He, JZ;  Wang, JH;  Wang, JH (reprint author), Nanchang Univ, Dept Phys, Nanchang 330031, Jiangxi, Peoples R China.;  Wang, JH (reprint author), Univ Maryland, Dept Chem & Biochem, College Pk, MD 20742 USA.;  Wang, JH (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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Statistical mechanics of the fashion game on random networks 期刊论文
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, 2016, 页码: 23203
Authors:  Sun, YF;  Sun, YF (reprint author), Renmin Univ China, Sch Stat, Ctr Appl Stat, Beijing 100872, Peoples R China.;  Sun, YF (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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Phase Diagrams (Theory)  Cavity And Replica Method  Random Graphs  Networks  
Evolutions of fluctuation modes and inner structures of global stock markets 期刊论文
INTERNATIONAL JOURNAL OF MODERN PHYSICS B, 2016, 卷号: 30, 期号: 32, 页码: 1650237
Authors:  Yan, Y;  Wang, L;  Liu, MX;  Chen, XS;  Liu, MX (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.
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Global Stock Market  Covariance Matrix  Principle Fluctuation Mode Analysis  Complex Network  
Conditional entropy in variation-adjusted windows detects selection signatures associated with expression quantitative trait loci (eQTLs) 期刊论文
BMC GENOMICS, 2015, 卷号: 16, 期号: 0, 页码: S8
Authors:  Handelman, SK;  Seweryn, M;  Smith, RM;  Hartmann, K;  Wang, DX;  Pietrzak, M;  Johnson, AD;  Kloczkowski, A;  Sadee, W;  Handelman, SK (reprint author), Ohio State Univ, Coll Med, Ctr Pharmacogen, Graves Hall,330 W 10th Ave, Columbus, OH 43210 USA.
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Fast adaptive flat-histogram ensemble to enhance the sampling in large systems 期刊论文
SCIENCE CHINA-PHYSICS MECHANICS & ASTRONOMY, 2015, 卷号: 58, 期号: 9, 页码: 590501
Authors:  Xu, S;  Zhou, X;  Jiang, Y;  Wang, YT;  Zhou, X (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, Beijing 100049, Peoples R China.
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Molecular Dynamics Simulations  Enhanced Sampling  Density Of States  Generalized Canonical Ensemble  Flat-histogram Ensemble  
Accurate disulfide-bonding network predictions improve ab initio structure prediction of cysteine-rich proteins 期刊论文
BIOINFORMATICS, 2015, 卷号: 31, 期号: 23, 页码: 3773-3781
Authors:  Yang, J;  He, BJ;  Jang, R;  Zhang, Y;  Shen, HB;  Zhang, Y (reprint author), Univ Michigan, Dept Computat Med & Bioinformat, Ann Arbor, MI 48109 USA.
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Self-organizing approach for meta-genomes 期刊论文
COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2014, 卷号: 53, 期号: Part A, 页码: 118-124
Authors:  Zhu, JF;  Zheng, WM;  Zheng, WM (reprint author), Acad Sinica, Inst Theoret Phys, Beijing 100190, Peoples R China.
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Protein-coding Regions  Microbial Genomes  Dna  Sequences  Diversity  Obesity  Flora