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Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts 期刊论文
BIOINFORMATICS, 2017, 卷号: 33, 期号: 23, 页码: 3749-3757
Authors:  Zhu, JW;  Zhang, HC;  Li, SC;  Wang, C;  Kong, LP;  Sun, SW;  Zheng, WM;  Bu, DB;  Bu, DB (reprint author), Chinese Acad Sci, Inst Comp Technol, Key Lab Intelligent Informat Proc, Beijing 100190, Peoples R China.;  Zheng, WM (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.
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Improving prediction of burial state of residues by exploiting correlation among residues 期刊论文
BMC BIOINFORMATICS, 2017, 卷号: 18, 页码: 70
Authors:  Gong, HE;  Zhang, HC;  Zhu, JW;  Wang, C;  Sun, SW;  Zheng, WM;  Bu, DB;  Bu, DB (reprint author), Chinese Acad Sci, Inst Comp Technol, Key Lab Intelligent Proc, Beijing 100190, Peoples R China.;  Zheng, WM (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.
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Protein Structure  Burial States Of Residue  Conditional Random Field  Residue Correlation  
Anchor Effect of Interactions Between Kinesin's Nucleotide-Binding Pocket and Microtubule 期刊论文
CELLULAR AND MOLECULAR BIOENGINEERING, 2017, 卷号: 10, 期号: 2, 页码: 162-173
Authors:  Jin, YM;  Geng, YZ;  Lu, LN;  Ma, YL;  Lu, G;  Zhang, H;  Ji, Q;  Geng, YZ (reprint author), Hebei Univ Technol, Sch Sci, Tianjin 300401, Peoples R China.;  Ji, Q (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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Kinesin  Microtubule  Nucleotide-binding Pocket  Anchor Effect  
Feedback arcs and node hierarchy in directed networks 期刊论文
CHINESE PHYSICS B, 2017, 卷号: 26, 期号: 7, 页码: 78901
Authors:  Zhao, JH;  Zhou, HJ;  Zhou, HJ (reprint author), Chinese Acad Sci, Inst Theoret Phys, Key Lab Theoret Phys, Beijing 100190, Peoples R China.;  Zhou, HJ (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, Beijing 100049, Peoples R China.
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Directed Graph  Feedback Arc  Hierarchy  Message-passing Algorithm  
Stabilities and Dynamics of Protein Folding Nuclei by Molecular Dynamics Simulation 期刊论文
COMMUNICATIONS IN THEORETICAL PHYSICS, 2017, 卷号: 68, 期号: 1, 页码: 137-148
Authors:  Song, YS;  Zhou, X;  Zheng, WM;  Wang, YT;  Wang, YT (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, Beijing 100049, Peoples R China.;  Wang, YT (reprint author), Chinese Acad Sci, Inst Theoret Phys, Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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Protein Folding  Molecular Dynamics Simulation  Structure Prediction  
Properties of Single-Layer Boron Sheets: First-Principle Study through MatCloud Platform 期刊论文
COMMUNICATIONS IN THEORETICAL PHYSICS, 2017, 卷号: 68, 期号: 1, 页码: 125-130
Authors:  Wang, ZG;  Yang, XY;  Qin, SJ;  Wang, CL;  Yang, XY (reprint author), Chinese Acad Sci, Comp Network Informat Ctr, Beijing 100190, Peoples R China.;  Yang, XY (reprint author), Univ Chinese Acad Sci, Beijing 100049, Peoples R China.
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First Principles  Boron Monolayer Structure  Electronic Properties  Matcloud  
Statistical properties of random clique networks 期刊论文
FRONTIERS OF PHYSICS, 2017, 卷号: 12, 期号: 5, 页码: 128909
Authors:  Ding, YM;  Meng, J;  Fan, JF;  Ye, FF;  Chen, XS;  Chen, XS (reprint author), Chinese Acad Sci, Inst Theoret Phys, Key Lab Theoret Phys, POB 2735, Beijing 100190, Peoples R China.;  Ye, FF (reprint author), Chinese Acad Sci, Inst Phys, Key Lab Soft Matter Phys, Beijing Natl Lab Condensed Matter Phys, Beijing 100190, Peoples R China.;  Chen, XS (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, Beijing 100049, Peoples R China.
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Complex Networks  Random Clique Networks  Motifs  Communicability  
Spike Pattern Structure Influences Synaptic Efficacy Variability under STDP and Synaptic Homeostasis. II: Spike Shuffling Methods on LIF Networks 期刊论文
FRONTIERS IN COMPUTATIONAL NEUROSCIENCE, 2016, 卷号: 10, 页码: 83
Authors:  Bi, ZD;  Zhou, CS;  Bi, ZD (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing, Peoples R China.;  Zhou, CS (reprint author), Hong Kong Baptist Univ, Dept Phys, Kowloon Tong, Hong Kong, Peoples R China.;  Zhou, CS (reprint author), Hong Kong Baptist Univ, Beijing Hong Kong Singapore Joint Ctr Nonlinear &, Ctr Nonlinear Studies, Inst Computat & Theoret Studies, Kowloon Tong, Hong Kong, Peoples R China.;  Zhou, CS (reprint author), Beijing Computat Sci Res Ctr, Beijing, Peoples R China.;  Zhou, CS (reprint author), Hong Kong Baptist Univ, Res Ctr, Inst Res & Continuing Educ, Shenzhen, Peoples R China.
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Spike Pattern Structure  Synaptic Plasticity  Efficacy Variability  Stdp  Synaptic Homeostasis  Spike Shuffling Methods  
Fast and simple decycling and dismantling of networks 期刊论文
SCIENTIFIC REPORTS, 2016, 卷号: 6, 页码: 37954
Authors:  Zdeborova, L;  Zhang, P;  Zhou, HJ;  Zhang, P (reprint author), Chinese Acad Sci, Inst Theoret Phys, CAS Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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Spike Pattern Structure Influences Synaptic Efficacy Variability under STDP and Synaptic Homeostasis. I: Spike Generating Models on Converging Motifs 期刊论文
FRONTIERS IN COMPUTATIONAL NEUROSCIENCE, 2016, 卷号: 10, 页码: 14
Authors:  Bi, ZD;  Zhou, CS;  Bi, ZD (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100080, Peoples R China.;  Zhou, CS (reprint author), Hong Kong Baptist Univ, Dept Phys, Kowloon Tong, Hong Kong, Peoples R China.;  Zhou, CS (reprint author), Hong Kong Baptist Univ, Inst Computat & Theoret Studies, Beijing Hong Kong Singapore Joint Ctr Nonlinear &, Ctr Nonlinear Studies, Kowloon Tong, Hong Kong, Peoples R China.;  Zhou, CS (reprint author), Beijing Computat Sci Res Ctr, Beijing, Peoples R China.;  Zhou, CS (reprint author), HKBU Inst Res & Continuing Educ, Res Ctr, Shenzhen, Peoples R China.
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Spike Pattern Structure  Synaptic Plasticity  Efficacy Variability  Stdp  Synaptic Homeostasis  Spike Generating Models