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Proofreading of DNA polymerase: a new kinetic model with higher-order terminal effects 期刊论文
JOURNAL OF PHYSICS-CONDENSED MATTER, 2017, 卷号: 29, 期号: 2, 页码: 25101
Authors:  Song, YS;  Shu, YG;  Zhou, X;  Ou-Yang, ZC;  Li, M;  Li, M (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, 19A Yuquan Rd, Beijing 100049, Peoples R China.
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Dna Polymerase  Proofreading  Kinetics  Fidelity  Higher-order Terminal Effects  
NeBcon: protein contact map prediction using neural network training coupled with naiive Bayes classifiers 期刊论文
BIOINFORMATICS, 2017, 卷号: 33, 期号: 15, 页码: 2296-2306
Authors:  He, BJ;  Mortuza, SM;  Wang, YT;  Shen, HB;  Zhang, Y;  Zhang, Y (reprint author), Univ Michigan, Dept Computat Med & Bioinformat, Ann Arbor, MI 48109 USA.;  Zhang, Y (reprint author), Univ Michigan, Dept Biol Chem, Ann Arbor, MI 48109 USA.
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Feedback arcs and node hierarchy in directed networks 期刊论文
CHINESE PHYSICS B, 2017, 卷号: 26, 期号: 7, 页码: 78901
Authors:  Zhao, JH;  Zhou, HJ;  Zhou, HJ (reprint author), Chinese Acad Sci, Inst Theoret Phys, Key Lab Theoret Phys, Beijing 100190, Peoples R China.;  Zhou, HJ (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, Beijing 100049, Peoples R China.
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Directed Graph  Feedback Arc  Hierarchy  Message-passing Algorithm  
Analytical solutions of the coupled Gross-Pitaevskii equations for the three-species Bose-Einstein condensates 期刊论文
JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL, 2017, 卷号: 50, 期号: 27, 页码: 275301
Authors:  Liu, YM;  Bao, CG;  Liu, YM (reprint author), Shaoguan Univ, Dept Phys, Shaoguan 512005, Peoples R China.;  Liu, YM (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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3-species Bose-einstein Condensate  Coupled Gross-pitaevskii Equations  Phase Diagrams  Miscible Phase  
The rock-paper-scissors game 期刊论文
CONTEMPORARY PHYSICS, 2016, 卷号: 57, 期号: 2, 页码: 151-163
Authors:  Zhou, HJ;  Zhou, HJ (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing, Peoples R China.
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Cyclic Dominance  Non-cooperative Game  Decision Making  Social Cycling  Conditional Response  Non-equilibrium  
The amplituhedron and the one-loop Grassmannian measure 期刊论文
JOURNAL OF HIGH ENERGY PHYSICS, 2016, 期号: 1, 页码: 112
Authors:  Bai, YT;  He, S;  Lam, T;  Bai, YT (reprint author), Princeton Univ, Dept Phys, Princeton, NJ 08544 USA.;  He, S (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.;  Lam, T (reprint author), Univ Michigan, Dept Math, 530 Church St, Ann Arbor, MI 48109 USA.
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Scattering Amplitudes  Supersymmetric Gauge Theory  Differential And Algebraic Geometry  
The bulk and the tail of minimal absent words in genome sequences 期刊论文
PHYSICAL BIOLOGY, 2016, 卷号: 13, 期号: 2, 页码: 26004
Authors:  Aurell, E;  Innocenti, N;  Zhou, HJ;  Innocenti, N (reprint author), Hebrew Univ Jerusalem, Sch Comp Sci & Engn, IL-91904 Jerusalem, Israel.
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Minimal Absent Words  Copy-mutation Evolution Model  Random Sequence  
Improving residue-residue contact prediction via low-rank and sparse decomposition of residue correlation matrix 期刊论文
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2016, 卷号: 472, 期号: 1, 页码: 217-222
Authors:  Zhang, HC;  Gao, YJ;  Deng, MH;  Wang, C;  Zhu, JW;  Li, SC;  Zheng, WM;  Bu, DB;  Bu, DB (reprint author), Chinese Acad Sci, Inst Comp Technol, Key Lab Intelligent Informat Proc, Beijing, Peoples R China.;  Zheng, WM (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China.
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Protein Contacts Prediction  Correlation Analysis  Background Correlation Removal  Low-rank And Sparse Matrix Decomposition  
The rock-paper-scissors game 期刊论文
CONTEMPORARY PHYSICS, 2016, 卷号: 57, 期号: 2, 页码: 151-163
Authors:  Zhou, HJ;  Zhou, HJ (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing, Peoples R China.
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Cyclic Dominance  Non-cooperative Game  Decision Making  Social Cycling  Conditional Response  Non-equilibrium  
The bulk and the tail of minimal absent words in genome sequences 期刊论文
PHYSICAL BIOLOGY, 2016, 卷号: 13, 期号: 2, 页码: 26004
Authors:  Aurell, E;  Innocenti, N;  Zhou, HJ
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minimal absent words  COMMUNITY RECONSTRUCTION  copy-mutation evolution model  EFFICIENT COMPUTATION  random sequence  SPONTANEOUS MUTATION  BACTERIA  PHYLOGENY  MATTER