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A Decrease in Transcription Capacity Limits Growth Rate upon Translation Inhibition 期刊论文
MSYSTEMS, 2020, 卷号: 5, 期号: 5, 页码: e00575-20
Authors:  Zhang, Qing;  Brambilla, Elisa;  Li, Rui;  Shi, Hualin;  Lagomarsino, Marco Cosentino;  Sclavi, Bianca
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RNA-POLYMERASE AVAILABILITY  ESCHERICHIA-COLI  RIBOSOMAL-RNA  GENE-EXPRESSION  PPGPP  EFFICIENCY  PROMOTERS  SUBUNITS  (P)PPGPP  REVEALS  
Cell Size Is Coordinated with Cell Cycle by Regulating Initiator Protein DnaA in E. coli 期刊论文
BIOPHYSICAL JOURNAL, 2020, 卷号: 119, 期号: 12, 页码: 2537-2557
Authors:  Zhang, Qing;  Zhang, Zhichao;  Shi, Hualin
Adobe PDF(1233Kb)  |  Favorite  |  View/Download：74/0  |  Submit date：2021/09/27
RATE-DEPENDENT CONTROL  GROWTH-RATE CONTROL  ESCHERICHIA-COLI  REPLICATION INITIATION  CHROMOSOME-REPLICATION  STRINGENT RESPONSE  BACILLUS-SUBTILIS  GENE-EXPRESSION  ATP HYDROLYSIS  DIVISION CYCLE  
Optimal Allocation of Bacterial Protein Resources under Nonlethal Protein Maturation Stress 期刊论文
BIOPHYSICAL JOURNAL, 2018, 卷号: 115, 期号: 5, 页码: 896-910
Authors:  Zhang, Q;  Li, R;  Li, JB;  Shi, HL
Adobe PDF(765Kb)  |  Favorite  |  View/Download：231/0  |  Submit date：2018/12/27
ESCHERICHIA-COLI PROTEOME  SIGMA-FACTOR COMPETITION  GENE-EXPRESSION  RNA-POLYMERASE  OXIDATIVE STRESS  GROWTH-INHIBITION  CELL-GROWTH  TRANSLATION  RATES  OVERPRODUCTION  
Strategy of tuning gene expression ratio in prokaryotic cell from perspective of noise and correlation 期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2015, 卷号: 365, 期号: 0, 页码: 377-389
Authors:  Li, R;  Xu, LF;  Shi, HL;  Shi, HL (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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Polar Effect  The Two-state Promoter  Transcription Terminator  Gene Expression Correlation  Operon Structure  
Quantifying the sequence-function relation in gene silencing by bacterial small RNAs 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 卷号: 108, 期号: 30, 页码: 12473-12478
Authors:  Hao, Y;  Zhang, ZJ;  Erickson, DW;  Huang, M;  Huang, YW;  Li, JB;  Hwa, T;  Shi, HL;  Shi, HL (reprint author), Univ Calif San Diego, Div Biol Sci, Mol Biol Sect, La Jolla, CA 92093 USA.
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Small Regulatory Rnas  Small Noncoding Rnas  Messenger-rna  Escherichia-coli  Binding-sites  Soluble-rna  Translational Initiation  Vibrio-cholerae  Outer-membrane  Hfq-binding  
A kinetic model of transcription initiation by RNA polymerase 期刊论文
JOURNAL OF MOLECULAR BIOLOGY, 2008, 卷号: 378, 期号: 3, 页码: 520-529
Authors:  Xue, Xiao-chuan;  Liu, Fei;  Ou-Yang, Zhong-can;  Xue, XC , Tsinghua Univ, Ctr Adv Study, Beijing 100084, Peoples R China
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Single-molecule Analysis  Escherichia-coli  Abortive Initiation  Promoter Clearance  In-vitro  Elongation Complex  Bubble Collapse  Dna  Escape  Mechanism