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DCA for genome-wide epistasis analysis: the statistical genetics perspective 期刊论文
PHYSICAL BIOLOGY, 2019, 卷号: 16, 期号: 2, 页码: 26002
Authors:  Gao, CY;  Cecconi, F;  Vulpiani, A;  Zhou, HJ;  Aurell, E
Favorite  |  View/Download:2/0  |  Submit date:2019/07/19
DIRECT-COUPLING ANALYSIS  PROTEIN-STRUCTURE  CONTACTS  HIV  IDENTIFICATION  RECOMBINATION  LINKAGE  LANDSCAPE  INFERENCE  MODEL  
Comparing NMR and X-ray protein structure: Lindemann-like parameters and NMR disorder 期刊论文
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2018, 卷号: 36, 期号: 9, 页码: 2331-2341
Authors:  Faraggi, E;  Dunker, AK;  Sussman, JL;  Kloczkowski, A
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BACKBONE TORSION ANGLES  MAJOR URINARY PROTEIN  INTRINSIC DISORDER  STRUCTURE PREDICTION  SECONDARY STRUCTURE  CRYSTAL-STRUCTURE  DYNAMICS  DIFFRACTION  CRYSTALLOGRAPHY  RECOGNITION  
Protection-against-water-attack determined difference between strengths of backbone hydrogen bonds in kinesin's neck zipper region 期刊论文
CHINESE PHYSICS B, 2018, 卷号: 27, 期号: 2, 页码: 28704
Authors:  Qin, JY;  Geng, YZ;  Lu, G;  Ji, Q;  Fang, HP
Favorite  |  View/Download:9/0  |  Submit date:2018/12/27
MOLECULAR-DYNAMICS  MOTOR  PROTEINS  LINKER  BINDING  DOMAIN  FORCE  
Correlation-compressed direct-coupling analysis 期刊论文
PHYSICAL REVIEW E, 2018, 卷号: 98, 期号: 3, 页码: 32407
Authors:  Gao, CY;  Zhou, HJ;  Aurell, E
Favorite  |  View/Download:5/0  |  Submit date:2018/12/27
STRUCTURE PREDICTION  PROTEIN-STRUCTURE  CONTACTS  IDENTIFICATION  MODEL  SEQUENCES  FAMILIES  HUMANS  
Template-based and free modeling of I-TASSER and QUARK pipelines using predicted contact maps in CASP12 期刊论文
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2018, 卷号: 86, 页码: 136-151
Authors:  Zhang, CX;  Mortuza, SM;  He, BJ;  Wang, YT;  Zhang, Y
Favorite  |  View/Download:6/0  |  Submit date:2018/12/27
PROTEIN-STRUCTURE PREDICTION  RESIDUE CONTACTS  SEQUENCE  ALIGNMENTS  ACCURACY  NETWORKS  ROLL  
Protection-against-water-attack determined difference between strengths of backbone hydrogen bonds in kinesin's neck zipper region 期刊论文
CHINESE PHYSICS B, 2018, 卷号: 27, 期号: 2, 页码: 28704
Authors:  Qin, JY;  Geng, YZ;  Lu, G;  Ji, Q;  Fang, HP
Favorite  |  View/Download:1/0  |  Submit date:2019/07/19
MOLECULAR-DYNAMICS  MOTOR  PROTEINS  LINKER  BINDING  DOMAIN  FORCE  
Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts 期刊论文
BIOINFORMATICS, 2017, 卷号: 33, 期号: 23, 页码: 3749-3757
Authors:  Zhu, JW;  Zhang, HC;  Li, SC;  Wang, C;  Kong, LP;  Sun, SW;  Zheng, WM;  Bu, DB;  Bu, DB (reprint author), Chinese Acad Sci, Inst Comp Technol, Key Lab Intelligent Informat Proc, Beijing 100190, Peoples R China.;  Zheng, WM (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.
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Feedback traps for virtual potentials 期刊论文
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, 2017, 卷号: 375, 期号: 2088, 页码: 20160217
Authors:  Gavrilov, M;  Bechhoefer, J;  Bechhoefer, J (reprint author), Simon Fraser Univ, Dept Phys, Burnaby, BC V5A 1S6, Canada.;  Bechhoefer, J (reprint author), Kavli Inst Theoret Phys China CAS, Beijing 100190, Peoples R China.
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Feedback Trap  Information Engine  Landauer Limit  Maxwell Demon  Optimal Control  Stochastic Work  
Improving prediction of burial state of residues by exploiting correlation among residues 期刊论文
BMC BIOINFORMATICS, 2017, 卷号: 18, 页码: 70
Authors:  Gong, HE;  Zhang, HC;  Zhu, JW;  Wang, C;  Sun, SW;  Zheng, WM;  Bu, DB;  Bu, DB (reprint author), Chinese Acad Sci, Inst Comp Technol, Key Lab Intelligent Proc, Beijing 100190, Peoples R China.;  Zheng, WM (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.
Adobe PDF(1505Kb)  |  Favorite  |  View/Download:26/0  |  Submit date:2017/12/21
Protein Structure  Burial States Of Residue  Conditional Random Field  Residue Correlation  
Anchor Effect of Interactions Between Kinesin's Nucleotide-Binding Pocket and Microtubule 期刊论文
CELLULAR AND MOLECULAR BIOENGINEERING, 2017, 卷号: 10, 期号: 2, 页码: 162-173
Authors:  Jin, YM;  Geng, YZ;  Lu, LN;  Ma, YL;  Lu, G;  Zhang, H;  Ji, Q;  Geng, YZ (reprint author), Hebei Univ Technol, Sch Sci, Tianjin 300401, Peoples R China.;  Ji, Q (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
Adobe PDF(5968Kb)  |  Favorite  |  View/Download:30/4  |  Submit date:2017/12/21
Kinesin  Microtubule  Nucleotide-binding Pocket  Anchor Effect