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SCI期刊论文 [19]
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Stabilities and Dynamics of Protein Folding Nuclei by Molecular Dynamics Simulation
期刊论文
COMMUNICATIONS IN THEORETICAL PHYSICS, 2017, 卷号: 68, 期号: 1, 页码: 137-148
Authors:
Song, YS
;
Zhou, X
;
Zheng, WM
;
Wang, YT
;
Wang, YT (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, Beijing 100049, Peoples R China.
;
Wang, YT (reprint author), Chinese Acad Sci, Inst Theoret Phys, Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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Submit date:2017/12/21
Protein Folding
Molecular Dynamics Simulation
Structure Prediction
Anisotropic formation mechanism and nanomechanics for the self-assembly process of cross-beta peptides
期刊论文
CHINESE PHYSICS B, 2017, 卷号: 26, 期号: 12, 页码: 128701
Authors:
Deng, L
;
Zhao, YR
;
Zhou, P
;
Xu, H
;
Wang, YT
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View/Download:13/0
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Submit date:2018/12/26
Steered Molecular-dynamics
Atomic-force Microscopy
Particle Mesh Ewald
Amyloid Fibrils
Free-energy
Intermolecular Forces
Monte-carlo
Nanotubes
Systems
Simulations
Modulation of intra- and inter-sheet interactions in short peptide self-assembly by acetonitrile in aqueous solution
期刊论文
CHINESE PHYSICS B, 2016, 卷号: 25, 期号: 12, 页码: 128704
Authors:
Deng, L
;
Zhao, YR
;
Zhou, P
;
Xu, H
;
Wang, YT
;
Xu, H (reprint author), China Univ Petr East China, Ctr Bioengn & Biotechnol, Qingdao 266580, Peoples R China.
;
Wang, YT (reprint author), Chinese Acad Sci, Inst Theoret Phys, Key Lab Theoret Phys, Beijing 100190, Peoples R China.
;
Wang, YT (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, Beijing 100049, Peoples R China.
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Submit date:2017/10/13
Solvent Effect
Peptide Self-assembly
Molecular Dynamics Simulation
Different nanostructures caused by competition of intra- and inter-beta-sheet interactions in hierarchical self-assembly of short peptides
期刊论文
JOURNAL OF COLLOID AND INTERFACE SCIENCE, 2016, 卷号: 464, 页码: 219-228
Authors:
Zhou, P
;
Deng, L
;
Wang, YT
;
Lu, JR
;
Xu, H
;
Wang, YT (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, 55 East Zhongguancun Road,POB 2735, Beijing 100190, Peoples R China.
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Submit date:2017/10/13
Short Peptides
Self-assembly
Nanostructures
Intermolecular Interactions
Molecular Packing Modes
Molecular Dynamics
Interplay between Intrinsic Conformational Propensities and Intermolecular Interactions in the Self-Assembly of Short Surfactant-like Peptides Composed of Leucine/Isoleucine
期刊论文
LANGMUIR, 2016, 卷号: 32, 期号: 18, 页码: 4662-4672
Authors:
Zhou, P
;
Deng, L
;
Wang, YT
;
Lu, JR
;
Xu, H
;
Xu, H (reprint author), China Univ Petr East China, State Key Lab Heavy Oil Proc, 66 Changjiang West Rd, Qingdao, Peoples R China.
;
Xu, H (reprint author), China Univ Petr East China, Ctr Bioengn & Biotechnol, 66 Changjiang West Rd, Qingdao, Peoples R China.
;
Wang, YT (reprint author), Chinese Acad Sci, Inst Theoret Phys, 55 East Zhongguancun Rd, Beijing, Peoples R China.
;
Lu, JR (reprint author), Univ Manchester Inst, Sch Phys & Astron, Phys Biol Lab, Manchester M13 9PL, Lancs, England.
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Submit date:2017/10/13
Effects of cooperation between translating ribosome and RNA polymerase on termination efficiency of the Rho-independent terminator
期刊论文
NUCLEIC ACIDS RESEARCH, 2016, 卷号: 44, 期号: 6, 页码: 2554-2563
Authors:
Li, R
;
Zhang, Q
;
Li, JB
;
Shi, HL
;
Shi, HL (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
;
Li, JB (reprint author), Chinese Acad Sci, Inst Chem, Beijing 100190, Peoples R China.
;
Li, JB (reprint author), Natl Ctr Nanosci & Technol, Beijing 100190, Peoples R China.
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Submit date:2017/10/13
Intrinsic defect formation in peptide self-assembly
期刊论文
APPLIED PHYSICS LETTERS, 2015, 卷号: 107, 期号: 4, 页码: 43701
Authors:
Deng, L
;
Zhao, YR
;
Xu, H
;
Wang, YT
;
Xu, H (reprint author), China Univ Petr East China, Ctr Bioengn & Biotechnol, 66 Changjiang West Rd, Qingdao 266580, Peoples R China.
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View/Download:34/5
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Submit date:2017/02/27
Reweighted ensemble dynamics simulations: Theory, improvement, and application
期刊论文
CHINESE PHYSICS B, 2015, 卷号: 24, 期号: 6, 页码: 60202
Authors:
Gong, LC
;
Zhou, X
;
Ouyang, ZC
;
Zhou, X (reprint author), Univ Chinese Acad Sci, Sch Phys, Beijing 100049, Peoples R China.
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Submit date:2016/11/21
Ensemble Dynamics Simulations
Peptides
Enhanced Sampling
Metastable States
Molecular Origin of the Self-Assembled Morphological Difference Caused by Varying the Order of Charged Residues in Short Peptides
期刊论文
JOURNAL OF PHYSICAL CHEMISTRY B, 2014, 卷号: 118, 期号: 43, 页码: 12501-12510
Authors:
Deng, L
;
Zhou, P
;
Zhao, YR
;
Wang, YT
;
Xu, H
;
Wang, YT (reprint author), Chinese Acad Sci, State Key Lab Theoret Phys, Inst Theoret Phys, 55 East Zhongguancun Rd,POB 2735, Beijing 100190, Peoples R China.
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Submit date:2015/06/03
Particle Mesh Ewald
Amyloid Fibril
Alzheimers-disease
Dynamics Method
Biomolecules
Simulations
Systems
Conformations
Distributions
Transitions
Line active molecules promote inhomogeneous structures in membranes: Theory, simulations and experiments
期刊论文
ADVANCES IN COLLOID AND INTERFACE SCIENCE, 2014, 卷号: 208, 期号: -, 页码: 58-65
Authors:
Palmieri, B
;
Yamamoto, T
;
Brewster, RC
;
Safran, SA
;
Safran, SA (reprint author), Weizmann Inst Sci, Dept Mat & Interfaces, IL-76100 Rehovot, Israel.
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Submit date:2015/06/03
Hybrid Lipids
Modulated Phases
Domain Formation
Model Membranes
Maximum Solubility
Bilayer Mixtures
Fluid Membranes
Lattice Model
Raft Domains
Cholesterol