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SCI期刊论文 [12]
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基因组时代的计算微生物学
期刊论文
中国科学:生命科学, 2017, 卷号: 47, 期号: 02, 页码: 159-170
Authors:
左光宏
;
郝柏林
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Submit date:2019/09/06
原核生物
亲缘树
分类系统
不用序列联配的基因组比较
Cvtree
Lvtree
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis
期刊论文
PLOS GENETICS, 2017, 卷号: 13, 期号: 2, 页码: e1006508
Authors:
Skwark, MJ
;
Croucher, NJ
;
Puranen, S
;
Chewapreecha, C
;
Pesonen, M
;
Xu, YY
;
Turner, P
;
Harris, SR
;
Beres, SB
;
Musser, JM
;
Parkhill, J
;
Bentley, SD
;
Aurell, E
;
Corander, J
;
Corander, J (reprint author), Wellcome Trust Sanger Inst, Pathogen Gen, Cambridge, England.
;
Aurell, E (reprint author), KTH Royal Inst Technol, Dept Computat Biol, Stockholm, Sweden.
;
Aurell, E (reprint author), Aalto Univ, Dept Appl Phys & Comp Sci, Espoo, Finland.
;
Aurell, E (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing, Peoples R China.
;
Corander, J (reprint author), Univ Helsinki, Dept Math & Stat, Helsinki, Finland.
;
Corander, J (reprint author), Univ Oslo, Dept Biostat, Oslo, Norway.
;
Corander, J (reprint author), Univ Cambridge, Dept Vet Med, Cambridge, England.
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Submit date:2017/12/21
Improving residue-residue contact prediction via low-rank and sparse decomposition of residue correlation matrix
期刊论文
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2016, 卷号: 472, 期号: 1, 页码: 217-222
Authors:
Zhang, HC
;
Gao, YJ
;
Deng, MH
;
Wang, C
;
Zhu, JW
;
Li, SC
;
Zheng, WM
;
Bu, DB
;
Bu, DB (reprint author), Chinese Acad Sci, Inst Comp Technol, Key Lab Intelligent Informat Proc, Beijing, Peoples R China.
;
Zheng, WM (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China.
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Submit date:2017/10/13
Protein Contacts Prediction
Correlation Analysis
Background Correlation Removal
Low-rank And Sparse Matrix Decomposition
Conditional entropy in variation-adjusted windows detects selection signatures associated with expression quantitative trait loci (eQTLs)
期刊论文
BMC GENOMICS, 2015, 卷号: 16, 期号: 0, 页码: S8
Authors:
Handelman, SK
;
Seweryn, M
;
Smith, RM
;
Hartmann, K
;
Wang, DX
;
Pietrzak, M
;
Johnson, AD
;
Kloczkowski, A
;
Sadee, W
;
Handelman, SK (reprint author), Ohio State Univ, Coll Med, Ctr Pharmacogen, Graves Hall,330 W 10th Ave, Columbus, OH 43210 USA.
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Submit date:2016/11/21
Self-organizing approach for meta-genomes
期刊论文
COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2014, 卷号: 53, 期号: Part A, 页码: 118-124
Authors:
Zhu, JF
;
Zheng, WM
;
Zheng, WM (reprint author), Acad Sinica, Inst Theoret Phys, Beijing 100190, Peoples R China.
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Submit date:2015/06/03
Protein-coding Regions
Microbial Genomes
Dna
Sequences
Diversity
Obesity
Flora
Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations
期刊论文
JOURNAL OF BIOTECHNOLOGY, 2010, 卷号: 149, 期号: 3, 页码: 115-119
Authors:
Li, Qiang
;
Xu, Zhao
;
Hao, Bailin
;
Hao, BL , Fudan Univ, Dept Phys, T Life Res Ctr, 220 Handan Rd, Shanghai 200433, Peoples R China
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Submit date:2012/08/02
Molecular Phylogeny
Trees
Reconstruction
Sequences
Evolution
Taxonomy
CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes
期刊论文
NUCLEIC ACIDS RESEARCH, 2009, 卷号: 37, 期号: suppl.2, 页码: W174-W178
Authors:
Xu, Zhao
;
Hao, Bailin
;
Xu, Z , Fudan Univ, T Life Res Ctr, 220 Handan Rd, Shanghai 200433, Peoples R China
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Submit date:2012/08/02
Prokaryote Phylogeny
Molecular Phylogeny
Trees
Reconstruction
Life
Tool
Prokaryotic branch of the Tree of Life: A composition vector approach
期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2008, 卷号: 46, 期号: 3, 页码: 258-262
Authors:
Bai-Lin Hao
;
Lei Gao
;
Hao, BL , Fudan Univ, T Life Res Ctr, Shanghai 200433, Peoples R China
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Submit date:2012/08/02
Molecular Phylogeny
Sequence Alignment
Genomes
Reconstruction
Proteins
Prokaryotic branch of the Tree of Life: A composition vector approach
会议论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, Beijing, PEOPLES R CHINA, JUN 03-07, 2007
Authors:
Hao, BL
;
Gao, L
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Submit date:2019/07/24
MOLECULAR PHYLOGENY
SEQUENCE ALIGNMENT
GENOMES
RECONSTRUCTION
PROTEINS
Whole genome molecular phylogeny of large dsDNA viruses using composition vector method
期刊论文
BMC EVOLUTIONARY BIOLOGY, 2007, 卷号: 7, 期号: 1, 页码: -
Authors:
Gao, Lei
;
Qi, Ji
;
Gao, L , Acad Sinica, Inst Theoret Phys, Beijing 100080, Peoples R China
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Submit date:2012/08/02
World Monkey Adenovirus
Large Dna Viruses
Sequence-analysis
Cellular Genes
Common Origin
Evolution
Hosts
Herpesvirus
Baculovirus
Protein