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Conditional entropy in variation-adjusted windows detects selection signatures associated with expression quantitative trait loci (eQTLs) 期刊论文
BMC GENOMICS, 2015, 卷号: 16, 期号: 0, 页码: S8
Authors:  Handelman, SK;  Seweryn, M;  Smith, RM;  Hartmann, K;  Wang, DX;  Pietrzak, M;  Johnson, AD;  Kloczkowski, A;  Sadee, W;  Handelman, SK (reprint author), Ohio State Univ, Coll Med, Ctr Pharmacogen, Graves Hall,330 W 10th Ave, Columbus, OH 43210 USA.
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Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach 期刊论文
CHINESE SCIENCE BULLETIN, 2010, 卷号: 55, 期号: 22, 页码: 2323-2328
Authors:  Sun JianDong;  Xu Zhao;  Hao BaiLin;  Hao, BL , Fudan Univ, Life Res Ctr T, Shanghai 200433, Peoples R China
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Prokaryote Phylogeny  Molecular Phylogeny  Trees  
Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations 期刊论文
JOURNAL OF BIOTECHNOLOGY, 2010, 卷号: 149, 期号: 3, 页码: 115-119
Authors:  Li, Qiang;  Xu, Zhao;  Hao, Bailin;  Hao, BL , Fudan Univ, Dept Phys, T Life Res Ctr, 220 Handan Rd, Shanghai 200433, Peoples R China
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Molecular Phylogeny  Trees  Reconstruction  Sequences  Evolution  Taxonomy  
A fungal phylogeny based on 82 complete genomes using the composition vector method 期刊论文
BMC EVOLUTIONARY BIOLOGY, 2009, 卷号: 9, 期号: 195, 页码: -
Authors:  Wang, Hao;  Xu, Zhao;  Gao, Lei;  Hao, Bailin;  Hao, BL , Fudan Univ, Dept Phys, T Life Res Ctr, Shanghai 200433, Peoples R China
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Paracoccidioides-brasiliensis  Prokaryote Phylogeny  Tree  Reconstruction  Ascomycota  Plant  Life  Classification  Incongruence  Systematics  
CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes 期刊论文
NUCLEIC ACIDS RESEARCH, 2009, 卷号: 37, 期号: suppl.2, 页码: W174-W178
Authors:  Xu, Zhao;  Hao, Bailin;  Xu, Z , Fudan Univ, T Life Res Ctr, 220 Handan Rd, Shanghai 200433, Peoples R China
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Prokaryote Phylogeny  Molecular Phylogeny  Trees  Reconstruction  Life  Tool  
The Genomes of Oryza sativa: A history of duplications 期刊论文
PLOS BIOLOGY, 2005, 卷号: 3, 期号: 2, 页码: 266-281
Authors:  Yu, J;  Wang, J;  Lin, W;  Li, SG;  Li, H;  Zhou, J;  Ni, PX;  Dong, W;  Hu, SN;  Zeng, CQ;  Zhang, JG;  Zhang, Y;  Li, RQ;  Xu, ZY;  Li, ST;  Li, XR;  Zheng, HK;  Cong, LJ;  Lin, L;  Yin, JN;  Geng, JN;  Li, GY;  Shi, JP;  Liu, J;  Lv, H;  Li, J;  Deng, YJ;  Ran, LH;  Shi, XL;  Wang, XY;  Wu, QF;  Li, CF;  Ren, XY;  Wang, JQ;  Wang, XL;  Li, DW;  Liu, DY;  Zhang, XW;  Ji, ZD;  Zhao, WM;  Sun, YQ;  Zhang, ZP;  Bao, JY;  Han, YJ;  Dong, LL;  Ji, J;  Chen, P;  Wu, SM;  Liu, JS;  Xiao, Y;  Bu, DB;  Tan, JL;  Yang, L;  Ye, C;  Zhang, JF;  Xu, JY;  Zhou, Y;  Yu, YP;  Zhang, B;  Zhuang, SL;  Wei, HB;  Liu, B;  Lei, M;  Yu, H;  Li, YZ;  Xu, H;  Wei, SL;  He, XM;  Fang, LJ;  Zhang, ZJ;  Zhang, YZ;  Huang, XG;  Su, ZX;  Tong, W;  Li, JH;  Tong, ZZ;  Li, SL;  Ye, J;  Wang, LS;  Fang, L;  Lei, TT;  Chen, C;  Chen, H;  Xu, Z;  Li, HH;  Huang, HY;  Zhang, F;  Xu, HY;  Li, N;  Zhao, CF;  Dong, LJ;  Huang, YQ;  Li, L;  Xi, Y;  Qi, QH;  Li, WJ;  Hu, W;  Zhang, YL;  Tian, XJ;  Jiao, YZ;  Liang, XH;  Jin, JA;  Gao, L;  Zheng, WM;  Hao, BL;  Liu, SQ;  Wang, W;  Yuan, LP;  Cao, ML;  McDermott, J;  Samudrala, R;  Wong, GKS;  Yang, HM;  Yu, J , Chinese Acad Sci, Beijing Genom Inst, Beijing Proteom Inst, Beijing Inst Genom, Beijing, Peoples R China.
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Rice Genome  Arabidopsis-thaliana  Sequence-analysis  Protein Networks  Draft Sequence  Plant Genomes  Genes  Evolution  Dna  Annotation  
Duplication and DNA segmental loss in the rice genome: implications for diploidization 期刊论文
NEW PHYTOLOGIST, 2005, 卷号: 165, 期号: 3, 页码: 937-946
Authors:  Wang, XY;  Shi, XL;  Hao, BL;  Ge, S;  Luo, JC;  Luo, JC , Peking Univ, Ctr Bioinformat, Natl Lab Plant Genet Engn & Prot Engn, Coll Life Sci, Beijing 100871, Peoples R China.
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Phylogenetic Analysis  Evolutionary History  Draft Sequence  Grass Genomes  Maize  Origin  Polyploidy  Japonica  Cereals  Genes  
Prokaryote phylogeny based on ribosomal proteins and aminoacyl tRNA synthetases by using the compositional distance approach 期刊论文
SCIENCE IN CHINA SERIES C-LIFE SCIENCES, 2004, 卷号: 47, 期号: 4, 页码: 313-321
Authors:  Wei, HB;  Qi, J;  Hao, BL;  Hao, BL , Fudan Univ, T Life Res Ctr, Shanghai 200433, Peoples R China.
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Methanopyrus-kandleri  Gene-transfer  Trees  Methanogens  Genome  Domain  Life  
Origin and phylogeny of chloroplasts revealed by a simple correlation analysis of complete genomes 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2004, 卷号: 21, 期号: 1, 页码: 200-206
Authors:  Chu, KH;  Qi, J;  Yu, ZG;  Anh, V;  Chu, KH , Chinese Univ Hong Kong, Dept Biol, Shatin, Hong Kong, Peoples R China.
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Mitochondrial Genome  Protein Sequences  Plastid Genome  Nucleotide-sequence  Gene-transfer  Red Algae  Evolution  Information  Nucleus  Trees