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Conditional entropy in variation-adjusted windows detects selection signatures associated with expression quantitative trait loci (eQTLs) 期刊论文
BMC GENOMICS, 2015, 卷号: 16, 期号: 0, 页码: S8
Authors:  Handelman, SK;  Seweryn, M;  Smith, RM;  Hartmann, K;  Wang, DX;  Pietrzak, M;  Johnson, AD;  Kloczkowski, A;  Sadee, W;  Handelman, SK (reprint author), Ohio State Univ, Coll Med, Ctr Pharmacogen, Graves Hall,330 W 10th Ave, Columbus, OH 43210 USA.
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Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach 期刊论文
CHINESE SCIENCE BULLETIN, 2010, 卷号: 55, 期号: 22, 页码: 2323-2328
Authors:  Sun JianDong;  Xu Zhao;  Hao BaiLin;  Hao, BL , Fudan Univ, Life Res Ctr T, Shanghai 200433, Peoples R China
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Prokaryote Phylogeny  Molecular Phylogeny  Trees  
Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations 期刊论文
JOURNAL OF BIOTECHNOLOGY, 2010, 卷号: 149, 期号: 3, 页码: 115-119
Authors:  Li, Qiang;  Xu, Zhao;  Hao, Bailin;  Hao, BL , Fudan Univ, Dept Phys, T Life Res Ctr, 220 Handan Rd, Shanghai 200433, Peoples R China
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Molecular Phylogeny  Trees  Reconstruction  Sequences  Evolution  Taxonomy  
CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes 期刊论文
NUCLEIC ACIDS RESEARCH, 2009, 卷号: 37, 期号: suppl.2, 页码: W174-W178
Authors:  Xu, Zhao;  Hao, Bailin;  Xu, Z , Fudan Univ, T Life Res Ctr, 220 Handan Rd, Shanghai 200433, Peoples R China
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Prokaryote Phylogeny  Molecular Phylogeny  Trees  Reconstruction  Life  Tool  
A fungal phylogeny based on 82 complete genomes using the composition vector method 期刊论文
BMC EVOLUTIONARY BIOLOGY, 2009, 卷号: 9, 期号: 195, 页码: -
Authors:  Wang, Hao;  Xu, Zhao;  Gao, Lei;  Hao, Bailin;  Hao, BL , Fudan Univ, Dept Phys, T Life Res Ctr, Shanghai 200433, Peoples R China
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Paracoccidioides-brasiliensis  Prokaryote Phylogeny  Tree  Reconstruction  Ascomycota  Plant  Life  Classification  Incongruence  Systematics  
Prokaryotic branch of the Tree of Life: A composition vector approach 会议论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, Beijing, PEOPLES R CHINA, JUN 03-07, 2007
Authors:  Hao, BL;  Gao, L
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MOLECULAR PHYLOGENY  SEQUENCE ALIGNMENT  GENOMES  RECONSTRUCTION  PROTEINS  
Duplication and DNA segmental loss in the rice genome: implications for diploidization 期刊论文
NEW PHYTOLOGIST, 2005, 卷号: 165, 期号: 3, 页码: 937-946
Authors:  Wang, XY;  Shi, XL;  Hao, BL;  Ge, S;  Luo, JC;  Luo, JC , Peking Univ, Ctr Bioinformat, Natl Lab Plant Genet Engn & Prot Engn, Coll Life Sci, Beijing 100871, Peoples R China.
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Phylogenetic Analysis  Evolutionary History  Draft Sequence  Grass Genomes  Maize  Origin  Polyploidy  Japonica  Cereals  Genes  
The Genomes of Oryza sativa: A history of duplications 期刊论文
PLOS BIOLOGY, 2005, 卷号: 3, 期号: 2, 页码: 266-281
Authors:  Yu, J;  Wang, J;  Lin, W;  Li, SG;  Li, H;  Zhou, J;  Ni, PX;  Dong, W;  Hu, SN;  Zeng, CQ;  Zhang, JG;  Zhang, Y;  Li, RQ;  Xu, ZY;  Li, ST;  Li, XR;  Zheng, HK;  Cong, LJ;  Lin, L;  Yin, JN;  Geng, JN;  Li, GY;  Shi, JP;  Liu, J;  Lv, H;  Li, J;  Deng, YJ;  Ran, LH;  Shi, XL;  Wang, XY;  Wu, QF;  Li, CF;  Ren, XY;  Wang, JQ;  Wang, XL;  Li, DW;  Liu, DY;  Zhang, XW;  Ji, ZD;  Zhao, WM;  Sun, YQ;  Zhang, ZP;  Bao, JY;  Han, YJ;  Dong, LL;  Ji, J;  Chen, P;  Wu, SM;  Liu, JS;  Xiao, Y;  Bu, DB;  Tan, JL;  Yang, L;  Ye, C;  Zhang, JF;  Xu, JY;  Zhou, Y;  Yu, YP;  Zhang, B;  Zhuang, SL;  Wei, HB;  Liu, B;  Lei, M;  Yu, H;  Li, YZ;  Xu, H;  Wei, SL;  He, XM;  Fang, LJ;  Zhang, ZJ;  Zhang, YZ;  Huang, XG;  Su, ZX;  Tong, W;  Li, JH;  Tong, ZZ;  Li, SL;  Ye, J;  Wang, LS;  Fang, L;  Lei, TT;  Chen, C;  Chen, H;  Xu, Z;  Li, HH;  Huang, HY;  Zhang, F;  Xu, HY;  Li, N;  Zhao, CF;  Dong, LJ;  Huang, YQ;  Li, L;  Xi, Y;  Qi, QH;  Li, WJ;  Hu, W;  Zhang, YL;  Tian, XJ;  Jiao, YZ;  Liang, XH;  Jin, JA;  Gao, L;  Zheng, WM;  Hao, BL;  Liu, SQ;  Wang, W;  Yuan, LP;  Cao, ML;  McDermott, J;  Samudrala, R;  Wong, GKS;  Yang, HM;  Yu, J , Chinese Acad Sci, Beijing Genom Inst, Beijing Proteom Inst, Beijing Inst Genom, Beijing, Peoples R China.
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Rice Genome  Arabidopsis-thaliana  Sequence-analysis  Protein Networks  Draft Sequence  Plant Genomes  Genes  Evolution  Dna  Annotation  
Origin and phylogeny of chloroplasts revealed by a simple correlation analysis of complete genomes 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2004, 卷号: 21, 期号: 1, 页码: 200-206
Authors:  Chu, KH;  Qi, J;  Yu, ZG;  Anh, V;  Chu, KH , Chinese Univ Hong Kong, Dept Biol, Shatin, Hong Kong, Peoples R China.
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Mitochondrial Genome  Protein Sequences  Plastid Genome  Nucleotide-sequence  Gene-transfer  Red Algae  Evolution  Information  Nucleus  Trees  
Prokaryote phylogeny based on ribosomal proteins and aminoacyl tRNA synthetases by using the compositional distance approach 期刊论文
SCIENCE IN CHINA SERIES C-LIFE SCIENCES, 2004, 卷号: 47, 期号: 4, 页码: 313-321
Authors:  Wei, HB;  Qi, J;  Hao, BL;  Hao, BL , Fudan Univ, T Life Res Ctr, Shanghai 200433, Peoples R China.
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Methanopyrus-kandleri  Gene-transfer  Trees  Methanogens  Genome  Domain  Life