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中国科学院理论物理研究所机构知识库
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SCI期刊论文 [38]
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Quantitative Connection between Cell Size and Growth Rate by Phospholipid Metabolism
期刊论文
CELLS, 2020, 卷号: 9, 期号: 2, 页码: 391
Authors:
Zhang, Zhichao
;
Zhang, Qing
;
Guan, Shaohua
;
Shi, Hualin
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Submit date:2020/06/16
HAEMOPHILUS-INFLUENZAE RD
GRAM-NEGATIVE BACTERIA
ESCHERICHIA-COLI
OUTER-MEMBRANE
FATTY-ACID
GUANOSINE TETRAPHOSPHATE
CARDIOLIPIN SYNTHASE
ADAPTIVE EVOLUTION
ENVELOPE
MODEL
Covering Problems and Core Percolations on Hypergraphs
期刊论文
PHYSICAL REVIEW LETTERS, 2020, 卷号: 124, 期号: 24, 页码: 248301
Authors:
Coutinho, Bruno Coelho
;
Wu, Ang-Kun
;
Zhou, Hai-Jun
;
Liu, Yang-Yu
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Submit date:2020/11/26
SET
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning
期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 537
Authors:
Zhang, Haicang
;
Zhang, Qi
;
Ju, Fusong
;
Zhu, Jianwei
;
Gao, Yujuan
;
Xie, Ziwei
;
Deng, Minghua
;
Sun, Shiwei
;
Zheng, Wei-Mou
;
Bu, Dongbo
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Submit date:2020/06/16
COUPLING ANALYSIS
SEQUENCE
EVOLUTIONARY
INFORMATION
NETWORKS
RANK
Controllability and maximum matchings of complex networks
期刊论文
PHYSICAL REVIEW E, 2019, 卷号: 99, 期号: 1, 页码: 12317
Authors:
Zhao, JH
;
Zhou, HJ
Adobe PDF(1078Kb)
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Submit date:2019/07/19
RANDOM GRAPHS
DYNAMICS
DCA for genome-wide epistasis analysis: the statistical genetics perspective
期刊论文
PHYSICAL BIOLOGY, 2019, 卷号: 16, 期号: 2, 页码: 26002
Authors:
Gao, CY
;
Cecconi, F
;
Vulpiani, A
;
Zhou, HJ
;
Aurell, E
Adobe PDF(1652Kb)
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Submit date:2019/07/19
DIRECT-COUPLING ANALYSIS
PROTEIN-STRUCTURE
CONTACTS
HIV
IDENTIFICATION
RECOMBINATION
LINKAGE
LANDSCAPE
INFERENCE
MODEL
Correlation-compressed direct-coupling analysis
期刊论文
PHYSICAL REVIEW E, 2018, 卷号: 98, 期号: 3, 页码: 32407
Authors:
Gao, CY
;
Zhou, HJ
;
Aurell, E
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Submit date:2018/12/27
STRUCTURE PREDICTION
PROTEIN-STRUCTURE
CONTACTS
IDENTIFICATION
MODEL
SEQUENCES
FAMILIES
HUMANS
Reoptimized UNRES Potential for Protein Model Quality Assessment
期刊论文
GENES, 2018, 卷号: 9, 期号: 12, 页码: 601
Authors:
Faraggi, E
;
Krupa, P
;
Mozolewska, MA
;
Liwo, A
;
Kloczkowski, A
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Submit date:2019/07/19
RESIDUE FORCE-FIELD
KNOWLEDGE-BASED POTENTIALS
ACCESSIBLE SURFACE-AREA
STRUCTURE PREDICTION
MOLECULAR-DYNAMICS
STATISTICAL POTENTIALS
STRUCTURE SIMULATIONS
POLYPEPTIDE-CHAINS
SCORING FUNCTION
WEB SERVER
Template-based and free modeling of I-TASSER and QUARK pipelines using predicted contact maps in CASP12
期刊论文
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2018, 卷号: 86, 页码: 136-151
Authors:
Zhang, CX
;
Mortuza, SM
;
He, BJ
;
Wang, YT
;
Zhang, Y
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Submit date:2018/12/27
PROTEIN-STRUCTURE PREDICTION
RESIDUE CONTACTS
SEQUENCE
ALIGNMENTS
ACCURACY
NETWORKS
ROLL
Statistical properties of random clique networks
期刊论文
FRONTIERS OF PHYSICS, 2017, 卷号: 12, 期号: 5, 页码: 128909
Authors:
Ding, YM
;
Meng, J
;
Fan, JF
;
Ye, FF
;
Chen, XS
;
Chen, XS (reprint author), Chinese Acad Sci, Inst Theoret Phys, Key Lab Theoret Phys, POB 2735, Beijing 100190, Peoples R China.
;
Ye, FF (reprint author), Chinese Acad Sci, Inst Phys, Key Lab Soft Matter Phys, Beijing Natl Lab Condensed Matter Phys, Beijing 100190, Peoples R China.
;
Chen, XS (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, Beijing 100049, Peoples R China.
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Submit date:2017/12/21
Complex Networks
Random Clique Networks
Motifs
Communicability
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis
期刊论文
PLOS GENETICS, 2017, 卷号: 13, 期号: 2, 页码: e1006508
Authors:
Skwark, MJ
;
Croucher, NJ
;
Puranen, S
;
Chewapreecha, C
;
Pesonen, M
;
Xu, YY
;
Turner, P
;
Harris, SR
;
Beres, SB
;
Musser, JM
;
Parkhill, J
;
Bentley, SD
;
Aurell, E
;
Corander, J
;
Corander, J (reprint author), Wellcome Trust Sanger Inst, Pathogen Gen, Cambridge, England.
;
Aurell, E (reprint author), KTH Royal Inst Technol, Dept Computat Biol, Stockholm, Sweden.
;
Aurell, E (reprint author), Aalto Univ, Dept Appl Phys & Comp Sci, Espoo, Finland.
;
Aurell, E (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing, Peoples R China.
;
Corander, J (reprint author), Univ Helsinki, Dept Math & Stat, Helsinki, Finland.
;
Corander, J (reprint author), Univ Oslo, Dept Biostat, Oslo, Norway.
;
Corander, J (reprint author), Univ Cambridge, Dept Vet Med, Cambridge, England.
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Submit date:2017/12/21