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Covering Problems and Core Percolations on Hypergraphs 期刊论文
PHYSICAL REVIEW LETTERS, 2020, 卷号: 124, 期号: 24, 页码: 248301
Authors:  Coutinho, Bruno Coelho;  Wu, Ang-Kun;  Zhou, Hai-Jun;  Liu, Yang-Yu
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SET  
Quantitative Connection between Cell Size and Growth Rate by Phospholipid Metabolism 期刊论文
CELLS, 2020, 卷号: 9, 期号: 2, 页码: 391
Authors:  Zhang, Zhichao;  Zhang, Qing;  Guan, Shaohua;  Shi, Hualin
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HAEMOPHILUS-INFLUENZAE RD  GRAM-NEGATIVE BACTERIA  ESCHERICHIA-COLI  OUTER-MEMBRANE  FATTY-ACID  GUANOSINE TETRAPHOSPHATE  CARDIOLIPIN SYNTHASE  ADAPTIVE EVOLUTION  ENVELOPE  MODEL  
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 537
Authors:  Zhang, Haicang;  Zhang, Qi;  Ju, Fusong;  Zhu, Jianwei;  Gao, Yujuan;  Xie, Ziwei;  Deng, Minghua;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
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COUPLING ANALYSIS  SEQUENCE  EVOLUTIONARY  INFORMATION  NETWORKS  RANK  
Controllability and maximum matchings of complex networks 期刊论文
PHYSICAL REVIEW E, 2019, 卷号: 99, 期号: 1, 页码: 12317
Authors:  Zhao, JH;  Zhou, HJ
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RANDOM GRAPHS  DYNAMICS  
DCA for genome-wide epistasis analysis: the statistical genetics perspective 期刊论文
PHYSICAL BIOLOGY, 2019, 卷号: 16, 期号: 2, 页码: 26002
Authors:  Gao, CY;  Cecconi, F;  Vulpiani, A;  Zhou, HJ;  Aurell, E
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DIRECT-COUPLING ANALYSIS  PROTEIN-STRUCTURE  CONTACTS  HIV  IDENTIFICATION  RECOMBINATION  LINKAGE  LANDSCAPE  INFERENCE  MODEL  
Correlation-compressed direct-coupling analysis 期刊论文
PHYSICAL REVIEW E, 2018, 卷号: 98, 期号: 3, 页码: 32407
Authors:  Gao, CY;  Zhou, HJ;  Aurell, E
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STRUCTURE PREDICTION  PROTEIN-STRUCTURE  CONTACTS  IDENTIFICATION  MODEL  SEQUENCES  FAMILIES  HUMANS  
Reoptimized UNRES Potential for Protein Model Quality Assessment 期刊论文
GENES, 2018, 卷号: 9, 期号: 12, 页码: 601
Authors:  Faraggi, E;  Krupa, P;  Mozolewska, MA;  Liwo, A;  Kloczkowski, A
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RESIDUE FORCE-FIELD  KNOWLEDGE-BASED POTENTIALS  ACCESSIBLE SURFACE-AREA  STRUCTURE PREDICTION  MOLECULAR-DYNAMICS  STATISTICAL POTENTIALS  STRUCTURE SIMULATIONS  POLYPEPTIDE-CHAINS  SCORING FUNCTION  WEB SERVER  
Template-based and free modeling of I-TASSER and QUARK pipelines using predicted contact maps in CASP12 期刊论文
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2018, 卷号: 86, 页码: 136-151
Authors:  Zhang, CX;  Mortuza, SM;  He, BJ;  Wang, YT;  Zhang, Y
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PROTEIN-STRUCTURE PREDICTION  RESIDUE CONTACTS  SEQUENCE  ALIGNMENTS  ACCURACY  NETWORKS  ROLL  
Statistical properties of random clique networks 期刊论文
FRONTIERS OF PHYSICS, 2017, 卷号: 12, 期号: 5, 页码: 128909
Authors:  Ding, YM;  Meng, J;  Fan, JF;  Ye, FF;  Chen, XS;  Chen, XS (reprint author), Chinese Acad Sci, Inst Theoret Phys, Key Lab Theoret Phys, POB 2735, Beijing 100190, Peoples R China.;  Ye, FF (reprint author), Chinese Acad Sci, Inst Phys, Key Lab Soft Matter Phys, Beijing Natl Lab Condensed Matter Phys, Beijing 100190, Peoples R China.;  Chen, XS (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, Beijing 100049, Peoples R China.
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Complex Networks  Random Clique Networks  Motifs  Communicability  
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis 期刊论文
PLOS GENETICS, 2017, 卷号: 13, 期号: 2, 页码: e1006508
Authors:  Skwark, MJ;  Croucher, NJ;  Puranen, S;  Chewapreecha, C;  Pesonen, M;  Xu, YY;  Turner, P;  Harris, SR;  Beres, SB;  Musser, JM;  Parkhill, J;  Bentley, SD;  Aurell, E;  Corander, J;  Corander, J (reprint author), Wellcome Trust Sanger Inst, Pathogen Gen, Cambridge, England.;  Aurell, E (reprint author), KTH Royal Inst Technol, Dept Computat Biol, Stockholm, Sweden.;  Aurell, E (reprint author), Aalto Univ, Dept Appl Phys & Comp Sci, Espoo, Finland.;  Aurell, E (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing, Peoples R China.;  Corander, J (reprint author), Univ Helsinki, Dept Math & Stat, Helsinki, Finland.;  Corander, J (reprint author), Univ Oslo, Dept Biostat, Oslo, Norway.;  Corander, J (reprint author), Univ Cambridge, Dept Vet Med, Cambridge, England.
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