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Balanced biosynthesis and trigger threshold resulting in a double adder mechanism of cell size control 期刊论文
COMMUNICATIONS IN THEORETICAL PHYSICS, 2021, 卷号: 73, 期号: 8, 页码: 85601
Authors:  Li, Leilei
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ESCHERICHIA-COLI  CHROMOSOME-REPLICATION  PROTEIN-DEGRADATION  GROWTH  HOMEOSTASIS  DIVISION  INITIATION  CYCLE  ADAPTATION  BACTERIA  
Kinetic assays of DNA polymerase fidelity: A theoretical perspective beyond Michaelis-Menten kinetics 期刊论文
PHYSICAL REVIEW E, 2021, 卷号: 104, 期号: 1, 页码: 14408
Authors:  Li, Qiu-Shi;  Shu, Yao-Gen;  Ou-Yang, Zhong-Can;  Li, Ming
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NUCLEOTIDE INCORPORATION  CONFORMATIONAL-CHANGES  SPONTANEOUS MUTATION  TRANSLOCATION STEP  MECHANISM  REPLICATION  EXONUCLEASE  SELECTION  DYNAMICS  BINDING  
Information geometry in the population dynamics of bacteria 期刊论文
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, 2020, 卷号: 2020, 期号: 7, 页码: 73501
Authors:  Zhang, Zihan;  Guan, Shaohua;  Shi, Hualin
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STATISTICAL DISTANCE  CELL-SIZE  THERMODYNAMICS  GROWTH  MODELS  
Cell Size Is Coordinated with Cell Cycle by Regulating Initiator Protein DnaA in E. coli 期刊论文
BIOPHYSICAL JOURNAL, 2020, 卷号: 119, 期号: 12, 页码: 2537-2557
Authors:  Zhang, Qing;  Zhang, Zhichao;  Shi, Hualin
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RATE-DEPENDENT CONTROL  GROWTH-RATE CONTROL  ESCHERICHIA-COLI  REPLICATION INITIATION  CHROMOSOME-REPLICATION  STRINGENT RESPONSE  BACILLUS-SUBTILIS  GENE-EXPRESSION  ATP HYDROLYSIS  DIVISION CYCLE  
Quantitative Connection between Cell Size and Growth Rate by Phospholipid Metabolism 期刊论文
CELLS, 2020, 卷号: 9, 期号: 2, 页码: 391
Authors:  Zhang, Zhichao;  Zhang, Qing;  Guan, Shaohua;  Shi, Hualin
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HAEMOPHILUS-INFLUENZAE RD  GRAM-NEGATIVE BACTERIA  ESCHERICHIA-COLI  OUTER-MEMBRANE  FATTY-ACID  GUANOSINE TETRAPHOSPHATE  CARDIOLIPIN SYNTHASE  ADAPTIVE EVOLUTION  ENVELOPE  MODEL  
Roper state from overlap fermions 期刊论文
PHYSICAL REVIEW D, 2020, 卷号: 101, 期号: 5, 页码: 54511
Authors:  Sun, Mingyang;  Chen, Ying;  Wang, Gen;  Alexandru, Andrei;  Dong, Shao-Jing;  Draper, Terrence;  Fallica, Jacob;  Gong, Ming;  Lee, Frank X.;  Li, Anyi;  Liang, Jian;  Liu, Keh-Fei;  Mathur, Nilmani;  Yang, Yi-Bo
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QUARK-MODEL  NUCLEON  SIGNATURES  RESONANCE  SPECTRUM  BARYONS  U(1)  QCD  
Template-specific fidelity of DNA replication with high-order neighbor effects: A first-passage approach 期刊论文
PHYSICAL REVIEW E, 2019, 卷号: 100, 期号: 1, 页码: 12131
Authors:  Li, Qiu-Shi;  Zheng, Pei-Dong;  Shu, Yao-Gen;  Ou-Yang, Zhong-Can;  Li, Ming
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MECHANISM  ENZYME  
Optimal Allocation of Bacterial Protein Resources under Nonlethal Protein Maturation Stress 期刊论文
BIOPHYSICAL JOURNAL, 2018, 卷号: 115, 期号: 5, 页码: 896-910
Authors:  Zhang, Q;  Li, R;  Li, JB;  Shi, HL
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ESCHERICHIA-COLI PROTEOME  SIGMA-FACTOR COMPETITION  GENE-EXPRESSION  RNA-POLYMERASE  OXIDATIVE STRESS  GROWTH-INHIBITION  CELL-GROWTH  TRANSLATION  RATES  OVERPRODUCTION  
Proofreading of DNA polymerase: a new kinetic model with higher-order terminal effects 期刊论文
JOURNAL OF PHYSICS-CONDENSED MATTER, 2017, 卷号: 29, 期号: 2, 页码: 25101
Authors:  Song, YS;  Shu, YG;  Zhou, X;  Ou-Yang, ZC;  Li, M;  Li, M (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, 19A Yuquan Rd, Beijing 100049, Peoples R China.
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Dna Polymerase  Proofreading  Kinetics  Fidelity  Higher-order Terminal Effects  
Free Energy Calculation for Base Pair Dissociation in a DNA Duplex 期刊论文
ACTA PHYSICO-CHIMICA SINICA, 2016, 卷号: 32, 期号: 5, 页码: 1282-1288
Authors:  Wu, SG;  Feng, D;  Wu, SG (reprint author), Sichuan Normal Univ, Coll Chem & Mat Sci, Chengdu 610068, Peoples R China.;  Wu, SG (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
Adobe PDF(2354Kb)  |  Favorite  |  View/Download:190/2  |  Submit date:2017/10/13
Potential Of Mean Force  Hydrogen Bond  Molecular Dynamics Simulation  Umbrella Sampling