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Proofreading of DNA polymerase: a new kinetic model with higher-order terminal effects 期刊论文
JOURNAL OF PHYSICS-CONDENSED MATTER, 2017, 卷号: 29, 期号: 2, 页码: 25101
Authors:  Song, YS;  Shu, YG;  Zhou, X;  Ou-Yang, ZC;  Li, M;  Li, M (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, 19A Yuquan Rd, Beijing 100049, Peoples R China.
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Dna Polymerase  Proofreading  Kinetics  Fidelity  Higher-order Terminal Effects  
Free Energy Calculation for Base Pair Dissociation in a DNA Duplex 期刊论文
ACTA PHYSICO-CHIMICA SINICA, 2016, 卷号: 32, 期号: 5, 页码: 1282-1288
Authors:  Wu, SG;  Feng, D;  Wu, SG (reprint author), Sichuan Normal Univ, Coll Chem & Mat Sci, Chengdu 610068, Peoples R China.;  Wu, SG (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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Potential Of Mean Force  Hydrogen Bond  Molecular Dynamics Simulation  Umbrella Sampling  
The bulk and the tail of minimal absent words in genome sequences 期刊论文
PHYSICAL BIOLOGY, 2016, 卷号: 13, 期号: 2, 页码: 26004
Authors:  Aurell, E;  Innocenti, N;  Zhou, HJ;  Innocenti, N (reprint author), Hebrew Univ Jerusalem, Sch Comp Sci & Engn, IL-91904 Jerusalem, Israel.
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Minimal Absent Words  Copy-mutation Evolution Model  Random Sequence  
Conditional entropy in variation-adjusted windows detects selection signatures associated with expression quantitative trait loci (eQTLs) 期刊论文
BMC GENOMICS, 2015, 卷号: 16, 期号: 0, 页码: S8
Authors:  Handelman, SK;  Seweryn, M;  Smith, RM;  Hartmann, K;  Wang, DX;  Pietrzak, M;  Johnson, AD;  Kloczkowski, A;  Sadee, W;  Handelman, SK (reprint author), Ohio State Univ, Coll Med, Ctr Pharmacogen, Graves Hall,330 W 10th Ave, Columbus, OH 43210 USA.
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A general theory of kinetics and thermodynamics of steady-state copolymerization 期刊论文
JOURNAL OF PHYSICS-CONDENSED MATTER, 2015, 卷号: 27, 期号: 23, 页码: 235105
Authors:  Shu, YG;  Song, YS;  Ou-Yang, ZC;  Li, M;  Shu, YG (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Zhong Guan Cun East St 55,POB 2735, Beijing 100190, Peoples R China.
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Steady-state Copolymerization  Depropagation  Higher-order Terminal Model  Kinetics  Thermodynamics  
The Directional Observation of Highly Dynamic Membrane Tubule Formation Induced by Engulfed Liposomes 期刊论文
SCIENTIFIC REPORTS, 2015, 卷号: 5, 期号: 0, 页码: 16559
Authors:  Zhang, XM;  Dai, LR;  Wang, AH;  Wolk, C;  Dobner, B;  Brezesinski, G;  Tang, YQ;  Wang, XY;  Li, JB;  Li, JB (reprint author), Natl Ctr Nanosci & Technol, Beijing 100190, Peoples R China.
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Coupling chromosomal replication to cell growth by the initiator protein DnaA in Escherichia coli 期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2012, 卷号: 314, 期号: -, 页码: 164-172
Authors:  Zhang, Q;  Shi, HL;  Shi, HL (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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Sequential Binding  Auto-regulation  Division Cycle  Gene Promoter  Adp-dnaa  Origin  Sites  Model  K-12  Seqa  
A full spd tight-binding treatment for electronic bands of graphitic tubes 期刊论文
SOLID STATE COMMUNICATIONS, 2009, 卷号: 149, 期号: 40910, 页码: 82-86
Authors:  Tang, Hui;  Jiang, Jin-Wu;  Wang, Bing-Shen;  Su, Zhao-Bin;  Tang, H , Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China
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Carbon Nanotubes  Angstrom  Tubules  
Motility of molecular motor 期刊论文
JOURNAL OF COMPUTATIONAL AND THEORETICAL NANOSCIENCE, 2007, 卷号: 4, 期号: 1, 页码: 71-76
Authors:  Shu, Yaogen;  Ou-Yang, Zhong-Can;  Shu, YG , Chinese Acad Sci, Inst Theoret Phys, POB 2735, Beijing 100080, Peoples R China
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Single Kinesin Molecules  Hand-over-hand  Dna-polymerase  Stranded-dna  Mechanism  Force  Replication  Movement  Dependence  Transport  
The effect of mechanical tension on DNA polymerase activity studied with a two-state model 期刊论文
MODERN PHYSICS LETTERS B, 2007, 卷号: 21, 期号: 17, 页码: 1097-1105
Authors:  Shu, Yaogen;  Shi, Hualin;  Shu, YG , Chinese Acad Sci, Inst Theoret Phys, POB 2735, Beijing 100080, Peoples R China
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Single-stranded-dna  Replication Fidelity  Exonuclease  Complex