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Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis 期刊论文
PLOS GENETICS, 2017, 卷号: 13, 期号: 2, 页码: e1006508
Authors:  Skwark, MJ;  Croucher, NJ;  Puranen, S;  Chewapreecha, C;  Pesonen, M;  Xu, YY;  Turner, P;  Harris, SR;  Beres, SB;  Musser, JM;  Parkhill, J;  Bentley, SD;  Aurell, E;  Corander, J;  Corander, J (reprint author), Wellcome Trust Sanger Inst, Pathogen Gen, Cambridge, England.;  Aurell, E (reprint author), KTH Royal Inst Technol, Dept Computat Biol, Stockholm, Sweden.;  Aurell, E (reprint author), Aalto Univ, Dept Appl Phys & Comp Sci, Espoo, Finland.;  Aurell, E (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing, Peoples R China.;  Corander, J (reprint author), Univ Helsinki, Dept Math & Stat, Helsinki, Finland.;  Corander, J (reprint author), Univ Oslo, Dept Biostat, Oslo, Norway.;  Corander, J (reprint author), Univ Cambridge, Dept Vet Med, Cambridge, England.
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The bulk and the tail of minimal absent words in genome sequences 期刊论文
PHYSICAL BIOLOGY, 2016, 卷号: 13, 期号: 2, 页码: 26004
Authors:  Aurell, E;  Innocenti, N;  Zhou, HJ;  Innocenti, N (reprint author), Hebrew Univ Jerusalem, Sch Comp Sci & Engn, IL-91904 Jerusalem, Israel.
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Minimal Absent Words  Copy-mutation Evolution Model  Random Sequence  
Theoretical studies on sRNA-mediated regulation in bacteria 期刊论文
CHINESE PHYSICS B, 2015, 卷号: 24, 期号: 12, 页码: 128703
Authors:  Chang, XX;  Xu, LF;  Shi, HL;  Xu, LF (reprint author), Jilin Univ, Dept Phys, Changchun 130012, Peoples R China.
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Srna-mediated Regulation  Kinetic Model  Crosstalk  
The Genomes of Oryza sativa: A history of duplications 期刊论文
PLOS BIOLOGY, 2005, 卷号: 3, 期号: 2, 页码: 266-281
Authors:  Yu, J;  Wang, J;  Lin, W;  Li, SG;  Li, H;  Zhou, J;  Ni, PX;  Dong, W;  Hu, SN;  Zeng, CQ;  Zhang, JG;  Zhang, Y;  Li, RQ;  Xu, ZY;  Li, ST;  Li, XR;  Zheng, HK;  Cong, LJ;  Lin, L;  Yin, JN;  Geng, JN;  Li, GY;  Shi, JP;  Liu, J;  Lv, H;  Li, J;  Deng, YJ;  Ran, LH;  Shi, XL;  Wang, XY;  Wu, QF;  Li, CF;  Ren, XY;  Wang, JQ;  Wang, XL;  Li, DW;  Liu, DY;  Zhang, XW;  Ji, ZD;  Zhao, WM;  Sun, YQ;  Zhang, ZP;  Bao, JY;  Han, YJ;  Dong, LL;  Ji, J;  Chen, P;  Wu, SM;  Liu, JS;  Xiao, Y;  Bu, DB;  Tan, JL;  Yang, L;  Ye, C;  Zhang, JF;  Xu, JY;  Zhou, Y;  Yu, YP;  Zhang, B;  Zhuang, SL;  Wei, HB;  Liu, B;  Lei, M;  Yu, H;  Li, YZ;  Xu, H;  Wei, SL;  He, XM;  Fang, LJ;  Zhang, ZJ;  Zhang, YZ;  Huang, XG;  Su, ZX;  Tong, W;  Li, JH;  Tong, ZZ;  Li, SL;  Ye, J;  Wang, LS;  Fang, L;  Lei, TT;  Chen, C;  Chen, H;  Xu, Z;  Li, HH;  Huang, HY;  Zhang, F;  Xu, HY;  Li, N;  Zhao, CF;  Dong, LJ;  Huang, YQ;  Li, L;  Xi, Y;  Qi, QH;  Li, WJ;  Hu, W;  Zhang, YL;  Tian, XJ;  Jiao, YZ;  Liang, XH;  Jin, JA;  Gao, L;  Zheng, WM;  Hao, BL;  Liu, SQ;  Wang, W;  Yuan, LP;  Cao, ML;  McDermott, J;  Samudrala, R;  Wong, GKS;  Yang, HM;  Yu, J , Chinese Acad Sci, Beijing Genom Inst, Beijing Proteom Inst, Beijing Inst Genom, Beijing, Peoples R China.
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Rice Genome  Arabidopsis-thaliana  Sequence-analysis  Protein Networks  Draft Sequence  Plant Genomes  Genes  Evolution  Dna  Annotation  
Duplication and DNA segmental loss in the rice genome: implications for diploidization 期刊论文
NEW PHYTOLOGIST, 2005, 卷号: 165, 期号: 3, 页码: 937-946
Authors:  Wang, XY;  Shi, XL;  Hao, BL;  Ge, S;  Luo, JC;  Luo, JC , Peking Univ, Ctr Bioinformat, Natl Lab Plant Genet Engn & Prot Engn, Coll Life Sci, Beijing 100871, Peoples R China.
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Phylogenetic Analysis  Evolutionary History  Draft Sequence  Grass Genomes  Maize  Origin  Polyploidy  Japonica  Cereals  Genes  
Test data sets and evaluation of gene prediction programs on the rice genome 期刊论文
JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY, 2005, 卷号: 20, 期号: 4, 页码: 446-453
Authors:  Li, H;  Liu, JS;  Xu, Z;  Jin, J;  Fang, L;  Gao, L;  Li, YD;  Xing, ZX;  Gao, SG;  Liu, T;  Li, HH;  Li, Y;  Fang, LJ;  Xie, HM;  Zheng, WM;  Hao, BL;  Hao, BL , Acad Sinica, Inst Theoret Phys, POB 2735, Beijing 100080, Peoples R China.
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Draft Sequence  Dna-sequences  Identification  Chromosome-4  Japonica  Search  Models  Blast  
Test data sets and evaluation of gene prediction programs on the rice genome 会议论文
JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY, Tsinghua, PEOPLES R CHINA, JUN, 2004
Authors:  Li, H;  Liu, JS;  Xu, Z;  Jin, J;  Fang, L;  Gao, L;  Li, YD;  Xing, ZX;  Gao, SG;  Liu, T;  Li, HH;  Li, Y;  Fang, LJ;  Xie, HM;  Zheng, WM;  Hao, BL
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DRAFT SEQUENCE  DNA-SEQUENCES  IDENTIFICATION  CHROMOSOME-4  JAPONICA  SEARCH  MODELS  BLAST  
Genomic signal search by dynamic programming 期刊论文
COMMUNICATIONS IN THEORETICAL PHYSICS, 2003, 卷号: 39, 期号: 6, 页码: 761-764
Authors:  Zheng, WM;  Zheng, WM , Acad Sinica, Inst Theoret Phys, POB 2735, Beijing 100080, Peoples R China.
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Sequences  Algorithm  Sites  
Genomic signal enhancement by clustering 期刊论文
COMMUNICATIONS IN THEORETICAL PHYSICS, 2003, 卷号: 39, 期号: 5, 页码: 631-634
Authors:  Zheng, WM;  Zheng, WM , Acad Sinica, Inst Theoret Phys, POB 2735, Beijing 100080, Peoples R China.
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Algorithm  Sequences  Sites  
A draft sequence of the rice genome (Oryza sativa L. ssp indica) 期刊论文
SCIENCE, 2002, 卷号: 296, 期号: 5565, 页码: 79-92
Authors:  Yu, J;  Hu, SN;  Wang, J;  Wong, GKS;  Li, SG;  Liu, B;  Deng, YJ;  Dai, L;  Zhou, Y;  Zhang, XQ;  Cao, ML;  Liu, J;  Sun, JD;  Tang, JB;  Chen, YJ;  Huang, XB;  Lin, W;  Ye, C;  Tong, W;  Cong, LJ;  Geng, JN;  Han, YJ;  Li, L;  Li, W;  Hu, GQ;  Huang, XG;  Li, WJ;  Li, J;  Liu, ZW;  Liu, JP;  Qi, QH;  Liu, JS;  Li, T;  Wang, XG;  Lu, H;  Wu, TT;  Zhu, M;  Ni, PX;  Han, H;  Dong, W;  Ren, XY;  Feng, XL;  Cui, P;  Li, XR;  Wang, H;  Xu, X;  Zhai, WX;  Xu, Z;  Zhang, JS;  He, SJ;  Zhang, JG;  Xu, JC;  Zhang, KL;  Zheng, XW;  Dong, JH;  Zeng, WY;  Tao, L;  Ye, J;  Tan, J;  Ren, XD;  Chen, XW;  He, J;  Liu, DF;  Tian, W;  Tian, CG;  Xia, HG;  Bao, QY;  Li, G;  Gao, H;  Cao, T;  Zhao, WM;  Li, P;  Chen, W;  Wang, XD;  Zhang, Y;  Hu, JF;  Liu, S;  Yang, J;  Zhang, GY;  Xiong, YQ;  Li, ZJ;  Mao, L;  Zhou, CS;  Zhu, Z;  Chen, RS;  Hao, BL;  Zheng, WM;  Chen, SY;  Guo, W;  Li, GJ;  Liu, SQ;  Tao, M;  Zhu, LH;  Yuan, LP;  Yang, HM;  Yuan, LP , Chinese Acad Sci, Inst Genet, Beijing 100101, Peoples R China.
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Transposable Elements  Arabidopsis-thaliana  Human Genes  Comparative Genetics  Biallelic Markers  Grass Genomes  Cpg Islands  Dna  Plants  Identification