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Mechanism of pyrophosphate ion release in T7 RNA polymerase revealed by free energy simulations 期刊论文
COMPUTATIONAL AND THEORETICAL CHEMISTRY, 2016, 卷号: 1094, 页码: 127-132
Authors:  Wu, SG;  Jiang, MQ;  Liu, L;  Wu, SG (reprint author), Sichuan Normal Univ, Coll Chem & Mat Sci, Chengdu 610068, Peoples R China.
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Molecular Dynamics Simulation  T7 Rna Polymerase  Ppi Release  Potential Of Mean Force  
The bulk and the tail of minimal absent words in genome sequences 期刊论文
PHYSICAL BIOLOGY, 2016, 卷号: 13, 期号: 2, 页码: 26004
Authors:  Aurell, E;  Innocenti, N;  Zhou, HJ;  Innocenti, N (reprint author), Hebrew Univ Jerusalem, Sch Comp Sci & Engn, IL-91904 Jerusalem, Israel.
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Minimal Absent Words  Copy-mutation Evolution Model  Random Sequence  
Mechano-chemical selections of two competitive unfolding pathways of a single DNA i-motif 期刊论文
CHINESE PHYSICS B, 2014, 卷号: 23, 期号: 6, 页码: 68702
Authors:  Xu, Y;  Chen, H;  Qu, YJ;  Efremov, AK;  Li, M;  Ouyang, ZC;  Liu, DS;  Yan, J;  Liu, DS (reprint author), Tsinghua Univ, Minist Educ, Dept Chem, Key Lab Organ Optoelect & Mol Engn, Beijing 100084, Peoples R China.
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G-quadruplex  Mechanical Stability  Rna-polymerase  Stranded-dna  Double Helix  B-dna  Molecule  Force  Proteins  Dynamics  
A Solution to a Single Molecular Experiment Problem 期刊论文
COMMUNICATIONS IN COMPUTATIONAL PHYSICS, 2009, 卷号: 6, 期号: 3, 页码: 577-585
Authors:  Liu, Yanhui;  Chen, Hu;  Hu, Lin;  Ou-Yang, Zhong-Can;  Yan, Jie;  Hu, L , Guizhou Univ, Guizhou Prov Key Lab Photoelectron Technol & Appl, Guiyang 550025, Peoples R China
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Stranded-dna  Double Helix  
Elastic-theory of low-dimensional continua and its applications in bio- and nano-structures 期刊论文
JOURNAL OF COMPUTATIONAL AND THEORETICAL NANOSCIENCE, 2008, 卷号: 5, 期号: 4, 页码: 422-448
Authors:  Tu, Z. C.;  Ou-Yang, Z. C.;  Ou-Yang, ZC , Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China
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Walled Carbon Nanotubes  Red-blood-cell  Scale Finite-element  Double-stranded Dna  Single-wall  Spontaneous-curvature  Bilayer-membranes  Vesicle Membranes  Youngs Modulus  Axisymmetrical Vesicles  
Motility of molecular motor 期刊论文
JOURNAL OF COMPUTATIONAL AND THEORETICAL NANOSCIENCE, 2007, 卷号: 4, 期号: 1, 页码: 71-76
Authors:  Shu, Yaogen;  Ou-Yang, Zhong-Can;  Shu, YG , Chinese Acad Sci, Inst Theoret Phys, POB 2735, Beijing 100080, Peoples R China
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Single Kinesin Molecules  Hand-over-hand  Dna-polymerase  Stranded-dna  Mechanism  Force  Replication  Movement  Dependence  Transport  
DNA conduction 期刊论文
JOURNAL OF COMPUTATIONAL AND THEORETICAL NANOSCIENCE, 2007, 卷号: 4, 期号: 3, 页码: 518-520
Authors:  Mu, Weihua;  Ou-Yang, Zhong-Can;  Mu, WH , Chinese Acad Sci, Inst Theoret Phys, POB 2735, Beijing 100080, Peoples R China
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Molecular Electronics  Electrical-conduction  Wires  
The effect of mechanical tension on DNA polymerase activity studied with a two-state model 期刊论文
MODERN PHYSICS LETTERS B, 2007, 卷号: 21, 期号: 17, 页码: 1097-1105
Authors:  Shu, Yaogen;  Shi, Hualin;  Shu, YG , Chinese Acad Sci, Inst Theoret Phys, POB 2735, Beijing 100080, Peoples R China
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Single-stranded-dna  Replication Fidelity  Exonuclease  Complex  
Driven translocation of a polynucleotide chain through a nanopore: A continuous time Monte Carlo study 期刊论文
PHYSICAL REVIEW E, 2006, 卷号: 74, 期号: 1, 页码: -
Authors:  Lam, Pui-Man;  Liu, Fei;  Ou-Yang, Zhong-can;  Lam, PM , Southern Univ, Dept Phys, Baton Rouge, LA 70813 USA
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Solid-state Nanopore  Single-stranded-dna  Polymer Translocation  Membrane Channel  Molecules  Hole  
Monte Carlo simulation for single RNA unfolding by force 期刊论文
BIOPHYSICAL JOURNAL, 2005, 卷号: 88, 期号: 1, 页码: 76-84
Authors:  Liu, F;  Ou-Yang, ZC;  Liu, F , Tsing Hua Univ, Ctr Adv Study, Beijing 100084, Peoples R China.
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Mechanical Force  Secondary Structure  Kinetic-model  Dna-molecules  Stranded-dna  Algorithm  Information  Pseudoknots  Prediction  Separation