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SCI期刊论文 [7]
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史华林 [5]
周海军 [1]
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Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis
期刊论文
PLOS GENETICS, 2017, 卷号: 13, 期号: 2, 页码: e1006508
Authors:
Skwark, MJ
;
Croucher, NJ
;
Puranen, S
;
Chewapreecha, C
;
Pesonen, M
;
Xu, YY
;
Turner, P
;
Harris, SR
;
Beres, SB
;
Musser, JM
;
Parkhill, J
;
Bentley, SD
;
Aurell, E
;
Corander, J
;
Corander, J (reprint author), Wellcome Trust Sanger Inst, Pathogen Gen, Cambridge, England.
;
Aurell, E (reprint author), KTH Royal Inst Technol, Dept Computat Biol, Stockholm, Sweden.
;
Aurell, E (reprint author), Aalto Univ, Dept Appl Phys & Comp Sci, Espoo, Finland.
;
Aurell, E (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing, Peoples R China.
;
Corander, J (reprint author), Univ Helsinki, Dept Math & Stat, Helsinki, Finland.
;
Corander, J (reprint author), Univ Oslo, Dept Biostat, Oslo, Norway.
;
Corander, J (reprint author), Univ Cambridge, Dept Vet Med, Cambridge, England.
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Submit date:2017/12/21
The bulk and the tail of minimal absent words in genome sequences
期刊论文
PHYSICAL BIOLOGY, 2016, 卷号: 13, 期号: 2, 页码: 26004
Authors:
Aurell, E
;
Innocenti, N
;
Zhou, HJ
;
Innocenti, N (reprint author), Hebrew Univ Jerusalem, Sch Comp Sci & Engn, IL-91904 Jerusalem, Israel.
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Submit date:2017/10/13
Minimal Absent Words
Copy-mutation Evolution Model
Random Sequence
Effects of cooperation between translating ribosome and RNA polymerase on termination efficiency of the Rho-independent terminator
期刊论文
NUCLEIC ACIDS RESEARCH, 2016, 卷号: 44, 期号: 6, 页码: 2554-2563
Authors:
Li, R
;
Zhang, Q
;
Li, JB
;
Shi, HL
;
Shi, HL (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
;
Li, JB (reprint author), Chinese Acad Sci, Inst Chem, Beijing 100190, Peoples R China.
;
Li, JB (reprint author), Natl Ctr Nanosci & Technol, Beijing 100190, Peoples R China.
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Submit date:2017/10/13
Strategy of tuning gene expression ratio in prokaryotic cell from perspective of noise and correlation
期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2015, 卷号: 365, 期号: 0, 页码: 377-389
Authors:
Li, R
;
Xu, LF
;
Shi, HL
;
Shi, HL (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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Submit date:2016/11/21
Polar Effect
The Two-state Promoter
Transcription Terminator
Gene Expression Correlation
Operon Structure
Theoretical studies on sRNA-mediated regulation in bacteria
期刊论文
CHINESE PHYSICS B, 2015, 卷号: 24, 期号: 12, 页码: 128703
Authors:
Chang, XX
;
Xu, LF
;
Shi, HL
;
Xu, LF (reprint author), Jilin Univ, Dept Phys, Changchun 130012, Peoples R China.
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Submit date:2016/11/21
Srna-mediated Regulation
Kinetic Model
Crosstalk
Theoretical Analysis of Catalytic-sRNA-Mediated Gene Silencing
期刊论文
JOURNAL OF MOLECULAR BIOLOGY, 2011, 卷号: 406, 期号: 1, 页码: 195-204
Authors:
Hao, Y
;
Xu, LF
;
Shi, HL
;
Shi, HL (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.
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Submit date:2013/05/17
Transcriptional Regulation
Escherichia-coli
Regulatory Rnas
Bacteria
Expression
Noise
Consequences
Numbers
Stress
System
Quantifying the sequence-function relation in gene silencing by bacterial small RNAs
期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 卷号: 108, 期号: 30, 页码: 12473-12478
Authors:
Hao, Y
;
Zhang, ZJ
;
Erickson, DW
;
Huang, M
;
Huang, YW
;
Li, JB
;
Hwa, T
;
Shi, HL
;
Shi, HL (reprint author), Univ Calif San Diego, Div Biol Sci, Mol Biol Sect, La Jolla, CA 92093 USA.
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Submit date:2013/05/17
Small Regulatory Rnas
Small Noncoding Rnas
Messenger-rna
Escherichia-coli
Binding-sites
Soluble-rna
Translational Initiation
Vibrio-cholerae
Outer-membrane
Hfq-binding