ITP OpenIR

Browse/Search Results:  1-10 of 10 Help

Selected(0)Clear Items/Page:    Sort:
Kinetic assays of DNA polymerase fidelity: A theoretical perspective beyond Michaelis-Menten kinetics 期刊论文
PHYSICAL REVIEW E, 2021, 卷号: 104, 期号: 1, 页码: 14408
Authors:  Li, Qiu-Shi;  Shu, Yao-Gen;  Ou-Yang, Zhong-Can;  Li, Ming
Favorite  |  View/Download:64/0  |  Submit date:2021/09/27
NUCLEOTIDE INCORPORATION  CONFORMATIONAL-CHANGES  SPONTANEOUS MUTATION  TRANSLOCATION STEP  MECHANISM  REPLICATION  EXONUCLEASE  SELECTION  DYNAMICS  BINDING  
Cell Size Is Coordinated with Cell Cycle by Regulating Initiator Protein DnaA in E. coli 期刊论文
BIOPHYSICAL JOURNAL, 2020, 卷号: 119, 期号: 12, 页码: 2537-2557
Authors:  Zhang, Qing;  Zhang, Zhichao;  Shi, Hualin
Adobe PDF(1233Kb)  |  Favorite  |  View/Download:36/0  |  Submit date:2021/09/27
RATE-DEPENDENT CONTROL  GROWTH-RATE CONTROL  ESCHERICHIA-COLI  REPLICATION INITIATION  CHROMOSOME-REPLICATION  STRINGENT RESPONSE  BACILLUS-SUBTILIS  GENE-EXPRESSION  ATP HYDROLYSIS  DIVISION CYCLE  
Molecular dynamics simulation study of the "stay or leave" problem for two magnesium ions in gene transcription 期刊论文
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2017, 卷号: 85, 期号: 6, 页码: 1002-1007
Authors:  Wu, SG;  Wu, SG (reprint author), Sichuan Normal Univ, Coll Chem & Mat Sci, Chengdu 610066, Peoples R China.
Adobe PDF(1267Kb)  |  Favorite  |  View/Download:186/2  |  Submit date:2017/12/21
Molecular Dynamics Simulation  T7 Rna Polymerase  Magnesium Ion  Transcription Mechanism  Free Energy  
Mechanism of NTP Binding to the Active Site of T7 RNA Polymerase Revealed by Free-Energy Simulation 期刊论文
BIOPHYSICAL JOURNAL, 2017, 卷号: 112, 期号: 11, 页码: 2253-2260
Authors:  Wu, SG;  Li, LC;  Li, Q;  Wu, SG (reprint author), Sichuan Normal Univ, Coll Chem & Mat Sci, Chengdu, Peoples R China.;  Wu, SG (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing, Peoples R China.
Adobe PDF(2261Kb)  |  Favorite  |  View/Download:201/1  |  Submit date:2017/12/21
Proofreading of DNA polymerase: a new kinetic model with higher-order terminal effects 期刊论文
JOURNAL OF PHYSICS-CONDENSED MATTER, 2017, 卷号: 29, 期号: 2, 页码: 25101
Authors:  Song, YS;  Shu, YG;  Zhou, X;  Ou-Yang, ZC;  Li, M;  Li, M (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, 19A Yuquan Rd, Beijing 100049, Peoples R China.
Adobe PDF(2168Kb)  |  Favorite  |  View/Download:279/0  |  Submit date:2017/12/21
Dna Polymerase  Proofreading  Kinetics  Fidelity  Higher-order Terminal Effects  
Mechanism of pyrophosphate ion release in T7 RNA polymerase revealed by free energy simulations 期刊论文
COMPUTATIONAL AND THEORETICAL CHEMISTRY, 2016, 卷号: 1094, 页码: 127-132
Authors:  Wu, SG;  Jiang, MQ;  Liu, L;  Wu, SG (reprint author), Sichuan Normal Univ, Coll Chem & Mat Sci, Chengdu 610068, Peoples R China.
Adobe PDF(1649Kb)  |  Favorite  |  View/Download:170/1  |  Submit date:2017/10/13
Molecular Dynamics Simulation  T7 Rna Polymerase  Ppi Release  Potential Of Mean Force  
Effects of cooperation between translating ribosome and RNA polymerase on termination efficiency of the Rho-independent terminator 期刊论文
NUCLEIC ACIDS RESEARCH, 2016, 卷号: 44, 期号: 6, 页码: 2554-2563
Authors:  Li, R;  Zhang, Q;  Li, JB;  Shi, HL;  Shi, HL (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.;  Li, JB (reprint author), Chinese Acad Sci, Inst Chem, Beijing 100190, Peoples R China.;  Li, JB (reprint author), Natl Ctr Nanosci & Technol, Beijing 100190, Peoples R China.
Adobe PDF(1861Kb)  |  Favorite  |  View/Download:233/2  |  Submit date:2017/10/13
The bulk and the tail of minimal absent words in genome sequences 期刊论文
PHYSICAL BIOLOGY, 2016, 卷号: 13, 期号: 2, 页码: 26004
Authors:  Aurell, E;  Innocenti, N;  Zhou, HJ;  Innocenti, N (reprint author), Hebrew Univ Jerusalem, Sch Comp Sci & Engn, IL-91904 Jerusalem, Israel.
Adobe PDF(1879Kb)  |  Favorite  |  View/Download:201/1  |  Submit date:2017/10/13
Minimal Absent Words  Copy-mutation Evolution Model  Random Sequence  
Sub-nanometer drift correction for super-resolution imaging 期刊论文
OPTICS LETTERS, 2014, 卷号: 39, 期号: 19, 页码: 5685-5688
Authors:  Tang, Y;  Wang, X;  Zhang, X;  Li, J;  Dai, L;  Tang, Y (reprint author), Chongqing Univ, Dept Phys, Chongqing 400044, Peoples R China.
Adobe PDF(731Kb)  |  Favorite  |  View/Download:244/0  |  Submit date:2015/06/03
Photoactivation Localization Microscopy  Optical Microscope  Fluorescence  Reconstruction  Registration  Nm  
F0F1-ATPase STATOR REGULATION STUDIED WITH A RESONANCE MODEL 期刊论文
BIODEVICES: PROCEEDINGS OF THE INTERNATIONAL CONFERENCE ON BIOMEDICAL ELECTRONICS AND DEVICES, 2012, 页码: 132-137
Authors:  Shu, YG;  Ou-Yang, ZC;  Shu, YG (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.
Adobe PDF(657Kb)  |  Favorite  |  View/Download:249/2  |  Submit date:2014/04/25
Atp Synthase  Molecular Machine  Proton Transport  F-1-atpase  Rotation  Driven  Mechanism  Kinetics  Motors