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Smoothing potential energy surface of proteins by hybrid coarse grained approach 期刊论文
CHINESE PHYSICS B, 2017, 卷号: 26, 期号: 5, 页码: 50202
Authors:  Lu, YK;  Zhou, X;  OuYang, ZC;  Zhou, X (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, Beijing 100049, Peoples R China.
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Coarse-grained  Hybrid Force Field  Enhanced Sampling  Protein Folding  
Reweighted ensemble dynamics simulations: Theory, improvement, and application 期刊论文
CHINESE PHYSICS B, 2015, 卷号: 24, 期号: 6, 页码: 60202
Authors:  Gong, LC;  Zhou, X;  Ouyang, ZC;  Zhou, X (reprint author), Univ Chinese Acad Sci, Sch Phys, Beijing 100049, Peoples R China.
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Ensemble Dynamics Simulations  Peptides  Enhanced Sampling  Metastable States  
Mechano-chemical selections of two competitive unfolding pathways of a single DNA i-motif 期刊论文
CHINESE PHYSICS B, 2014, 卷号: 23, 期号: 6, 页码: 68702
Authors:  Xu, Y;  Chen, H;  Qu, YJ;  Efremov, AK;  Li, M;  Ouyang, ZC;  Liu, DS;  Yan, J;  Liu, DS (reprint author), Tsinghua Univ, Minist Educ, Dept Chem, Key Lab Organ Optoelect & Mol Engn, Beijing 100084, Peoples R China.
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G-quadruplex  Mechanical Stability  Rna-polymerase  Stranded-dna  Double Helix  B-dna  Molecule  Force  Proteins  Dynamics  
Nonequilibrium work equalities in isolated quantum systems 期刊论文
CHINESE PHYSICS B, 2014, 卷号: 23, 期号: 7, 页码: 70512
Authors:  Liu, F;  Ouyang, ZC;  Liu, F (reprint author), Beihang Univ, Sch Phys & Nucl Energy Engn, Beijing 100191, Peoples R China.
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Free-energy Differences  Fluctuation Theorem  2nd Law  Irreversible-processes  Dynamical Ensembles  Stochastic Dynamics  Diffusion-processes  Master-equation  Steady-states  Equilibrium  
Formation and dissociation of protonated cytosine-cytosine base pairs in i-motifs by ab initio quantum chemical calculations 期刊论文
CHINESE PHYSICS B, 2014, 卷号: 23, 期号: 2, 页码: 20702
Authors:  Zhang, XH;  Li, M;  Wang, YT;  Ouyang, ZC;  Wang, YT (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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Crystal-structure  Gas-phase  Dna  Dynamics  Telomere  Strand