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Optimal Allocation of Bacterial Protein Resources under Nonlethal Protein Maturation Stress 期刊论文
BIOPHYSICAL JOURNAL, 2018, 卷号: 115, 期号: 5, 页码: 896-910
Authors:  Zhang, Q;  Li, R;  Li, JB;  Shi, HL
Favorite  |  View/Download:7/0  |  Submit date:2018/12/27
ESCHERICHIA-COLI PROTEOME  SIGMA-FACTOR COMPETITION  GENE-EXPRESSION  RNA-POLYMERASE  OXIDATIVE STRESS  GROWTH-INHIBITION  CELL-GROWTH  TRANSLATION  RATES  OVERPRODUCTION  
Effects of cooperation between translating ribosome and RNA polymerase on termination efficiency of the Rho-independent terminator 期刊论文
NUCLEIC ACIDS RESEARCH, 2016, 卷号: 44, 期号: 6, 页码: 2554-2563
Authors:  Li, R;  Zhang, Q;  Li, JB;  Shi, HL;  Shi, HL (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.;  Li, JB (reprint author), Chinese Acad Sci, Inst Chem, Beijing 100190, Peoples R China.;  Li, JB (reprint author), Natl Ctr Nanosci & Technol, Beijing 100190, Peoples R China.
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Strategy of tuning gene expression ratio in prokaryotic cell from perspective of noise and correlation 期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2015, 卷号: 365, 期号: 0, 页码: 377-389
Authors:  Li, R;  Xu, LF;  Shi, HL;  Shi, HL (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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Polar Effect  The Two-state Promoter  Transcription Terminator  Gene Expression Correlation  Operon Structure  
Theoretical studies on sRNA-mediated regulation in bacteria 期刊论文
CHINESE PHYSICS B, 2015, 卷号: 24, 期号: 12, 页码: 128703
Authors:  Chang, XX;  Xu, LF;  Shi, HL;  Xu, LF (reprint author), Jilin Univ, Dept Phys, Changchun 130012, Peoples R China.
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Srna-mediated Regulation  Kinetic Model  Crosstalk  
The energy pump and the origin of the non-equilibrium flux of the dynamical systems and the networks 期刊论文
JOURNAL OF CHEMICAL PHYSICS, 2012, 卷号: 136, 期号: 16, 页码: 165102
Authors:  Xu, LF;  Shi, HL;  Feng, HD;  Wang, J;  Xu, LF (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.
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Yeast-cell Cycle  Steady-state Thermodynamics  Funneled Landscape Leads  Mapk Signal-transduction  Chemical-reactions  Dissipation Cost  Gene-expression  Master Equation  Robustness  Fluctuations  
Coupling chromosomal replication to cell growth by the initiator protein DnaA in Escherichia coli 期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2012, 卷号: 314, 期号: -, 页码: 164-172
Authors:  Zhang, Q;  Shi, HL;  Shi, HL (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
Adobe PDF(691Kb)  |  Favorite  |  View/Download:462/33  |  Submit date:2014/04/24
Sequential Binding  Auto-regulation  Division Cycle  Gene Promoter  Adp-dnaa  Origin  Sites  Model  K-12  Seqa  
Theoretical Analysis of Catalytic-sRNA-Mediated Gene Silencing 期刊论文
JOURNAL OF MOLECULAR BIOLOGY, 2011, 卷号: 406, 期号: 1, 页码: 195-204
Authors:  Hao, Y;  Xu, LF;  Shi, HL;  Shi, HL (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.
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Transcriptional Regulation  Escherichia-coli  Regulatory Rnas  Bacteria  Expression  Noise  Consequences  Numbers  Stress  System  
The effect of mechanical tension on DNA polymerase activity studied with a two-state model 期刊论文
MODERN PHYSICS LETTERS B, 2007, 卷号: 21, 期号: 17, 页码: 1097-1105
Authors:  Shu, Yaogen;  Shi, Hualin;  Shu, YG , Chinese Acad Sci, Inst Theoret Phys, POB 2735, Beijing 100080, Peoples R China
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Single-stranded-dna  Replication Fidelity  Exonuclease  Complex  
Cooperative effects on the kinetics of ATP hydrolysis in collective molecular motors 期刊论文
PHYSICAL REVIEW E, 2004, 卷号: 69, 期号: 2, 页码: -
Authors:  Shu, YG;  Shi, HL;  Shu, YG , Chinese Acad Sci, Inst Theoret Phys, POB 2735, Beijing 100080, Peoples R China.
Adobe PDF(148Kb)  |  Favorite  |  View/Download:84/8  |  Submit date:2012/08/30
Single Kinesin Molecule  Brownian Motor  8-nm Step  Ratchets  Motion  Load  
Temperature-dependent frequency shifts in collective excitations of a Bose-Einstein condensate 期刊论文
PHYSICAL REVIEW A, 1999, 卷号: 59, 期号: 2, 页码: 1562-1565
Authors:  Shi, HL;  Zheng, WM;  Shi, HL , Acad Sinica, Inst Theoret Phys, POB 2735, Beijing 100080, Peoples R China.
Adobe PDF(119Kb)  |  Favorite  |  View/Download:81/11  |  Submit date:2012/08/29
Attractive Interactions  Atomic Gas  Energy