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DCA for genome-wide epistasis analysis: the statistical genetics perspective 期刊论文
PHYSICAL BIOLOGY, 2019, 卷号: 16, 期号: 2, 页码: 26002
Authors:  Gao, CY;  Cecconi, F;  Vulpiani, A;  Zhou, HJ;  Aurell, E
Favorite  |  View/Download:0/0  |  Submit date:2019/07/19
DIRECT-COUPLING ANALYSIS  PROTEIN-STRUCTURE  CONTACTS  HIV  IDENTIFICATION  RECOMBINATION  LINKAGE  LANDSCAPE  INFERENCE  MODEL  
Correlation-compressed direct-coupling analysis 期刊论文
PHYSICAL REVIEW E, 2018, 卷号: 98, 期号: 3, 页码: 32407
Authors:  Gao, CY;  Zhou, HJ;  Aurell, E
Favorite  |  View/Download:2/0  |  Submit date:2018/12/27
STRUCTURE PREDICTION  PROTEIN-STRUCTURE  CONTACTS  IDENTIFICATION  MODEL  SEQUENCES  FAMILIES  HUMANS  
Correlation-compressed direct-coupling analysis 期刊论文
PHYSICAL REVIEW E, 2018, 卷号: 98, 期号: 3, 页码: 32407
Authors:  Gao, CY;  Zhou, HJ;  Aurell, E
Favorite  |  View/Download:2/0  |  Submit date:2018/12/26
STRUCTURE PREDICTION  PROTEIN-STRUCTURE  CONTACTS  IDENTIFICATION  MODEL  SEQUENCES  FAMILIES  HUMANS  
Global Estimates of Errors in Quantum Computation by the Feynman-Vernon Formalism 期刊论文
JOURNAL OF STATISTICAL PHYSICS, 2018, 卷号: 171, 期号: 5, 页码: 745-767
Authors:  Aurell, E
Favorite  |  View/Download:1/0  |  Submit date:2018/12/27
COMPUTERS  SUPREMACY  MEMORIES  DYNAMICS  SYSTEMS  
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis 期刊论文
PLOS GENETICS, 2017, 卷号: 13, 期号: 2, 页码: e1006508
Authors:  Skwark, MJ;  Croucher, NJ;  Puranen, S;  Chewapreecha, C;  Pesonen, M;  Xu, YY;  Turner, P;  Harris, SR;  Beres, SB;  Musser, JM;  Parkhill, J;  Bentley, SD;  Aurell, E;  Corander, J;  Corander, J (reprint author), Wellcome Trust Sanger Inst, Pathogen Gen, Cambridge, England.;  Aurell, E (reprint author), KTH Royal Inst Technol, Dept Computat Biol, Stockholm, Sweden.;  Aurell, E (reprint author), Aalto Univ, Dept Appl Phys & Comp Sci, Espoo, Finland.;  Aurell, E (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing, Peoples R China.;  Corander, J (reprint author), Univ Helsinki, Dept Math & Stat, Helsinki, Finland.;  Corander, J (reprint author), Univ Oslo, Dept Biostat, Oslo, Norway.;  Corander, J (reprint author), Univ Cambridge, Dept Vet Med, Cambridge, England.
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Cavity master equation for the continuous time dynamics of discrete-spin models 期刊论文
PHYSICAL REVIEW E, 2017, 卷号: 95, 期号: 5, 页码: 52119
Authors:  Aurell, E;  Del Ferraro, G;  Dominguez, E;  Mulet, R;  Del Ferraro, G (reprint author), AlbaNova Univ Ctr, Dept Computat Biol, SE-10691 Stockholm, Sweden.
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The bulk and the tail of minimal absent words in genome sequences 期刊论文
PHYSICAL BIOLOGY, 2016, 卷号: 13, 期号: 2, 页码: 26004
Authors:  Aurell, E;  Innocenti, N;  Zhou, HJ;  Innocenti, N (reprint author), Hebrew Univ Jerusalem, Sch Comp Sci & Engn, IL-91904 Jerusalem, Israel.
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Minimal Absent Words  Copy-mutation Evolution Model  Random Sequence  
On one-step replica symmetry breaking in the Edwards-Anderson spin glass model 期刊论文
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, 2016, 页码: 73305
Authors:  Del Ferraro, G;  Wang, C;  Zhou, HJ;  Aurell, E;  Del Ferraro, G (reprint author), KTH Royal Inst Technol, AlbaNova Univ Ctr, Dept Computat Biol, SE-10691 Stockholm, Sweden.
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Message-passing Algorithms  Optimization Over Networks  Spin Glasses (Theory)  Cavity And Replica Method  
The bulk and the tail of minimal absent words in genome sequences 期刊论文
PHYSICAL BIOLOGY, 2016, 卷号: 13, 期号: 2, 页码: 26004
Authors:  Aurell, E;  Innocenti, N;  Zhou, HJ
Favorite  |  View/Download:0/0  |  Submit date:2019/04/08
minimal absent words  COMMUNITY RECONSTRUCTION  copy-mutation evolution model  EFFICIENT COMPUTATION  random sequence  SPONTANEOUS MUTATION  BACTERIA  PHYLOGENY  MATTER  
On one-step replica symmetry breaking in the Edwards-Anderson spin glass model 期刊论文
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, 2016, 页码: 73305
Authors:  Del Ferraro, G;  Wang, C;  Zhou, HJ;  Aurell, E
Favorite  |  View/Download:0/0  |  Submit date:2019/04/08
message-passing algorithms  CLUSTER VARIATION METHOD  optimization over networks  METASTABLE STATES  spin glasses (theory)  SATISFIABILITY  cavity and replica method  PROPAGATION  ALGORITHMS