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Irreversible Markov chain Monte Carlo algorithm for self-avoiding walk 期刊论文
FRONTIERS OF PHYSICS, 2017, 卷号: 12, 期号: 1, 页码: 120503
Authors:  Hu, H;  Chen, XS;  Deng, YJ;  Deng, YJ (reprint author), Univ Sci & Technol China, Natl Lab Phys Sci Microscale, Hefei 230026, Peoples R China.;  Deng, YJ (reprint author), Univ Sci & Technol China, Dept Modern Phys, Hefei 230026, Peoples R China.;  Deng, YJ (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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Monte Carlo Algorithms  Self-avoiding Walk  Irreversible  Balance Condition  
蛋白质中残基远程相互作用预测算法研究综述 期刊论文
计算机研究与发展, 2017, 卷号: 54, 期号: 01, 页码: 1-19
Authors:  张海仓;  高玉娟;  邓明华;  郑伟谋;  卜东波
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残基远程相互作用预测  蛋白质三级结构预测  图模型  共进化  机器学习  
Adaptive multi-GPU Exchange Monte Carlo for the 3D Random Field Ising Model 期刊论文
COMPUTER PHYSICS COMMUNICATIONS, 2016, 卷号: 205, 页码: 48-60
Authors:  Navarro, CA;  Huang, W;  Deng, YJ;  Navarro, CA (reprint author), Univ Austral Chile, Inst Informat, Valdivia, Chile.
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Gpu Computing  Adaptive Temperatures  Exchange Monte Carlo Algorithm  Random Field Ising Model  
Equivalent-neighbor Potts models in two dimensions 期刊论文
PHYSICAL REVIEW E, 2016, 卷号: 94, 期号: 5, 页码: 52103
Authors:  Qian, XF;  Deng, YJ;  Liu, YH;  Guo, WA;  Blote, HWJ;  Deng, YJ (reprint author), Univ Sci & Technol China, Dept Modern Phys, Hefei Natl Lab Phys Sci Microscale, Hefei 230027, Peoples R China.;  Deng, YJ (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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Improving residue-residue contact prediction via low-rank and sparse decomposition of residue correlation matrix 期刊论文
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2016, 卷号: 472, 期号: 1, 页码: 217-222
Authors:  Zhang, HC;  Gao, YJ;  Deng, MH;  Wang, C;  Zhu, JW;  Li, SC;  Zheng, WM;  Bu, DB;  Bu, DB (reprint author), Chinese Acad Sci, Inst Comp Technol, Key Lab Intelligent Informat Proc, Beijing, Peoples R China.;  Zheng, WM (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China.
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Protein Contacts Prediction  Correlation Analysis  Background Correlation Removal  Low-rank And Sparse Matrix Decomposition  
Universal critical wrapping probabilities in the canonical ensemble 期刊论文
NUCLEAR PHYSICS B, 2015, 卷号: 898, 期号: 0, 页码: 157-172
Authors:  Hu, H;  Deng, YJ;  Deng, YJ (reprint author), Univ Sci & Technol China, Natl Lab Phys Sci Microscale, Hefei 230026, Anhui, Peoples R China.
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The Genomes of Oryza sativa: A history of duplications 期刊论文
PLOS BIOLOGY, 2005, 卷号: 3, 期号: 2, 页码: 266-281
Authors:  Yu, J;  Wang, J;  Lin, W;  Li, SG;  Li, H;  Zhou, J;  Ni, PX;  Dong, W;  Hu, SN;  Zeng, CQ;  Zhang, JG;  Zhang, Y;  Li, RQ;  Xu, ZY;  Li, ST;  Li, XR;  Zheng, HK;  Cong, LJ;  Lin, L;  Yin, JN;  Geng, JN;  Li, GY;  Shi, JP;  Liu, J;  Lv, H;  Li, J;  Deng, YJ;  Ran, LH;  Shi, XL;  Wang, XY;  Wu, QF;  Li, CF;  Ren, XY;  Wang, JQ;  Wang, XL;  Li, DW;  Liu, DY;  Zhang, XW;  Ji, ZD;  Zhao, WM;  Sun, YQ;  Zhang, ZP;  Bao, JY;  Han, YJ;  Dong, LL;  Ji, J;  Chen, P;  Wu, SM;  Liu, JS;  Xiao, Y;  Bu, DB;  Tan, JL;  Yang, L;  Ye, C;  Zhang, JF;  Xu, JY;  Zhou, Y;  Yu, YP;  Zhang, B;  Zhuang, SL;  Wei, HB;  Liu, B;  Lei, M;  Yu, H;  Li, YZ;  Xu, H;  Wei, SL;  He, XM;  Fang, LJ;  Zhang, ZJ;  Zhang, YZ;  Huang, XG;  Su, ZX;  Tong, W;  Li, JH;  Tong, ZZ;  Li, SL;  Ye, J;  Wang, LS;  Fang, L;  Lei, TT;  Chen, C;  Chen, H;  Xu, Z;  Li, HH;  Huang, HY;  Zhang, F;  Xu, HY;  Li, N;  Zhao, CF;  Dong, LJ;  Huang, YQ;  Li, L;  Xi, Y;  Qi, QH;  Li, WJ;  Hu, W;  Zhang, YL;  Tian, XJ;  Jiao, YZ;  Liang, XH;  Jin, JA;  Gao, L;  Zheng, WM;  Hao, BL;  Liu, SQ;  Wang, W;  Yuan, LP;  Cao, ML;  McDermott, J;  Samudrala, R;  Wong, GKS;  Yang, HM;  Yu, J , Chinese Acad Sci, Beijing Genom Inst, Beijing Proteom Inst, Beijing Inst Genom, Beijing, Peoples R China.
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Rice Genome  Arabidopsis-thaliana  Sequence-analysis  Protein Networks  Draft Sequence  Plant Genomes  Genes  Evolution  Dna  Annotation  
A theoretical scheme for multi-user quantum key distribution with N Einstein-Podolsky-Rosen pairs on a passive optical network 期刊论文
CHINESE PHYSICS LETTERS, 2002, 卷号: 19, 期号: 7, 页码: 893-896
Authors:  Deng, FG;  Liu, XS;  Ma, YJ;  Xiao, L;  Long, GL;  Deng, FG , Tsing Hua Univ, Dept Phys, Beijing 100084, Peoples R China.
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Cryptography  States  
Cooperative three- and four-player quantum games 期刊论文
PHYSICS LETTERS A, 2002, 卷号: 301, 期号: 40972, 页码: 117-124
Authors:  Ma, YJ;  Long, GL;  Deng, FG;  Li, F;  Zhang, SX;  Long, GL , Tsing Hua Univ, Dept Phys, Beijing 100084, Peoples R China.
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Strategies  
A draft sequence of the rice genome (Oryza sativa L. ssp indica) 期刊论文
SCIENCE, 2002, 卷号: 296, 期号: 5565, 页码: 79-92
Authors:  Yu, J;  Hu, SN;  Wang, J;  Wong, GKS;  Li, SG;  Liu, B;  Deng, YJ;  Dai, L;  Zhou, Y;  Zhang, XQ;  Cao, ML;  Liu, J;  Sun, JD;  Tang, JB;  Chen, YJ;  Huang, XB;  Lin, W;  Ye, C;  Tong, W;  Cong, LJ;  Geng, JN;  Han, YJ;  Li, L;  Li, W;  Hu, GQ;  Huang, XG;  Li, WJ;  Li, J;  Liu, ZW;  Liu, JP;  Qi, QH;  Liu, JS;  Li, T;  Wang, XG;  Lu, H;  Wu, TT;  Zhu, M;  Ni, PX;  Han, H;  Dong, W;  Ren, XY;  Feng, XL;  Cui, P;  Li, XR;  Wang, H;  Xu, X;  Zhai, WX;  Xu, Z;  Zhang, JS;  He, SJ;  Zhang, JG;  Xu, JC;  Zhang, KL;  Zheng, XW;  Dong, JH;  Zeng, WY;  Tao, L;  Ye, J;  Tan, J;  Ren, XD;  Chen, XW;  He, J;  Liu, DF;  Tian, W;  Tian, CG;  Xia, HG;  Bao, QY;  Li, G;  Gao, H;  Cao, T;  Zhao, WM;  Li, P;  Chen, W;  Wang, XD;  Zhang, Y;  Hu, JF;  Liu, S;  Yang, J;  Zhang, GY;  Xiong, YQ;  Li, ZJ;  Mao, L;  Zhou, CS;  Zhu, Z;  Chen, RS;  Hao, BL;  Zheng, WM;  Chen, SY;  Guo, W;  Li, GJ;  Liu, SQ;  Tao, M;  Zhu, LH;  Yuan, LP;  Yang, HM;  Yuan, LP , Chinese Acad Sci, Inst Genet, Beijing 100101, Peoples R China.
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Transposable Elements  Arabidopsis-thaliana  Human Genes  Comparative Genetics  Biallelic Markers  Grass Genomes  Cpg Islands  Dna  Plants  Identification