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Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 页码: 135
Authors:  Wang, C;  Wei, Y;  Zhang, HC;  Kong, LP;  Sun, SW;  Zheng, WM;  Bu, DB
Favorite  |  View/Download:0/0  |  Submit date:2019/07/19
TERTIARY STRUCTURES  FRAGMENTS  
NeBcon: protein contact map prediction using neural network training coupled with naiive Bayes classifiers 期刊论文
BIOINFORMATICS, 2017, 卷号: 33, 期号: 15, 页码: 2296-2306
Authors:  He, BJ;  Mortuza, SM;  Wang, YT;  Shen, HB;  Zhang, Y;  Zhang, Y (reprint author), Univ Michigan, Dept Computat Med & Bioinformat, Ann Arbor, MI 48109 USA.;  Zhang, Y (reprint author), Univ Michigan, Dept Biol Chem, Ann Arbor, MI 48109 USA.
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Co-emergence of multi-scale cortical activities of irregular firing, oscillations and avalanches achieves cost-efficient information capacity 期刊论文
PLOS COMPUTATIONAL BIOLOGY, 2017, 卷号: 13, 期号: 2, 页码: e1005384
Authors:  Yang, DP;  Zhou, HJ;  Zhou, CS;  Zhou, CS (reprint author), Hong Kong Baptist Univ, Dept Phys, Kowloon Tong, Hong Kong, Peoples R China.;  Zhou, CS (reprint author), Hong Kong Baptist Univ, Ctr Nonlinear Studies, Kowloon Tong, Hong Kong, Peoples R China.;  Zhou, CS (reprint author), Hong Kong Baptist Univ, Beijing Hong Kong Singapore Joint Ctr Nonlinear &, Inst Computat & Theoret Studies, Kowloon Tong, Hong Kong, Peoples R China.;  Yang, DP (reprint author), Univ Sydney, Sch Phys, Sydney, NSW, Australia.;  Zhou, CS (reprint author), Beijing Computat Sci Res Ctr, Beijing, Peoples R China.;  Zhou, CS (reprint author), Virtual Univ, HKBU Inst Res & Continuing Educ, Res Ctr, Pk Bldg,South Area Hitech Ind Pk, Shenzhen, Peoples R China.
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Improving prediction of burial state of residues by exploiting correlation among residues 期刊论文
BMC BIOINFORMATICS, 2017, 卷号: 18, 页码: 70
Authors:  Gong, HE;  Zhang, HC;  Zhu, JW;  Wang, C;  Sun, SW;  Zheng, WM;  Bu, DB;  Bu, DB (reprint author), Chinese Acad Sci, Inst Comp Technol, Key Lab Intelligent Proc, Beijing 100190, Peoples R China.;  Zheng, WM (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.
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Protein Structure  Burial States Of Residue  Conditional Random Field  Residue Correlation  
Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts 期刊论文
BIOINFORMATICS, 2017, 卷号: 33, 期号: 23, 页码: 3749-3757
Authors:  Zhu, JW;  Zhang, HC;  Li, SC;  Wang, C;  Kong, LP;  Sun, SW;  Zheng, WM;  Bu, DB;  Bu, DB (reprint author), Chinese Acad Sci, Inst Comp Technol, Key Lab Intelligent Informat Proc, Beijing 100190, Peoples R China.;  Zheng, WM (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.
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Spike Pattern Structure Influences Synaptic Efficacy Variability under STDP and Synaptic Homeostasis. I: Spike Generating Models on Converging Motifs 期刊论文
FRONTIERS IN COMPUTATIONAL NEUROSCIENCE, 2016, 卷号: 10, 页码: 14
Authors:  Bi, ZD;  Zhou, CS;  Bi, ZD (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100080, Peoples R China.;  Zhou, CS (reprint author), Hong Kong Baptist Univ, Dept Phys, Kowloon Tong, Hong Kong, Peoples R China.;  Zhou, CS (reprint author), Hong Kong Baptist Univ, Inst Computat & Theoret Studies, Beijing Hong Kong Singapore Joint Ctr Nonlinear &, Ctr Nonlinear Studies, Kowloon Tong, Hong Kong, Peoples R China.;  Zhou, CS (reprint author), Beijing Computat Sci Res Ctr, Beijing, Peoples R China.;  Zhou, CS (reprint author), HKBU Inst Res & Continuing Educ, Res Ctr, Shenzhen, Peoples R China.
Adobe PDF(3639Kb)  |  Favorite  |  View/Download:28/2  |  Submit date:2017/10/13
Spike Pattern Structure  Synaptic Plasticity  Efficacy Variability  Stdp  Synaptic Homeostasis  Spike Generating Models  
FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition 期刊论文
BIOINFORMATICS, 2016, 卷号: 32, 期号: 3, 页码: 462-464
Authors:  Wang, C;  Zhang, HC;  Zheng, WM;  Xu, D;  Zhu, JW;  Wang, B;  Ning, K;  Sun, SW;  Li, SC;  Bu, DB;  Bu, DB (reprint author), Chinese Acad Sci, Inst Comp Technol, Key Lab Intelligent Informat Proc, Beijing, Peoples R China.;  Li, SC (reprint author), City Univ Hong Kong, Dept Comp Sci, Kowloon, Hong Kong, Peoples R China.
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Spike Pattern Structure Influences Synaptic Efficacy Variability under STDP and Synaptic Homeostasis. II: Spike Shuffling Methods on LIF Networks 期刊论文
FRONTIERS IN COMPUTATIONAL NEUROSCIENCE, 2016, 卷号: 10, 页码: 83
Authors:  Bi, ZD;  Zhou, CS;  Bi, ZD (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing, Peoples R China.;  Zhou, CS (reprint author), Hong Kong Baptist Univ, Dept Phys, Kowloon Tong, Hong Kong, Peoples R China.;  Zhou, CS (reprint author), Hong Kong Baptist Univ, Beijing Hong Kong Singapore Joint Ctr Nonlinear &, Ctr Nonlinear Studies, Inst Computat & Theoret Studies, Kowloon Tong, Hong Kong, Peoples R China.;  Zhou, CS (reprint author), Beijing Computat Sci Res Ctr, Beijing, Peoples R China.;  Zhou, CS (reprint author), Hong Kong Baptist Univ, Res Ctr, Inst Res & Continuing Educ, Shenzhen, Peoples R China.
Adobe PDF(4437Kb)  |  Favorite  |  View/Download:17/5  |  Submit date:2017/10/13
Spike Pattern Structure  Synaptic Plasticity  Efficacy Variability  Stdp  Synaptic Homeostasis  Spike Shuffling Methods  
Accurate disulfide-bonding network predictions improve ab initio structure prediction of cysteine-rich proteins 期刊论文
BIOINFORMATICS, 2015, 卷号: 31, 期号: 23, 页码: 3773-3781
Authors:  Yang, J;  He, BJ;  Jang, R;  Zhang, Y;  Shen, HB;  Zhang, Y (reprint author), Univ Michigan, Dept Computat Med & Bioinformat, Ann Arbor, MI 48109 USA.
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Strategy of tuning gene expression ratio in prokaryotic cell from perspective of noise and correlation 期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2015, 卷号: 365, 期号: 0, 页码: 377-389
Authors:  Li, R;  Xu, LF;  Shi, HL;  Shi, HL (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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Polar Effect  The Two-state Promoter  Transcription Terminator  Gene Expression Correlation  Operon Structure