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Optimal Allocation of Bacterial Protein Resources under Nonlethal Protein Maturation Stress 期刊论文
BIOPHYSICAL JOURNAL, 2018, 卷号: 115, 期号: 5, 页码: 896-910
Authors:  Zhang, Q;  Li, R;  Li, JB;  Shi, HL
Favorite  |  View/Download:5/0  |  Submit date:2018/12/27
ESCHERICHIA-COLI PROTEOME  SIGMA-FACTOR COMPETITION  GENE-EXPRESSION  RNA-POLYMERASE  OXIDATIVE STRESS  GROWTH-INHIBITION  CELL-GROWTH  TRANSLATION  RATES  OVERPRODUCTION  
Proofreading of DNA polymerase: a new kinetic model with higher-order terminal effects 期刊论文
JOURNAL OF PHYSICS-CONDENSED MATTER, 2017, 卷号: 29, 期号: 2, 页码: 25101
Authors:  Song, YS;  Shu, YG;  Zhou, X;  Ou-Yang, ZC;  Li, M;  Li, M (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, 19A Yuquan Rd, Beijing 100049, Peoples R China.
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Dna Polymerase  Proofreading  Kinetics  Fidelity  Higher-order Terminal Effects  
Molecular dynamics simulation study of the "stay or leave" problem for two magnesium ions in gene transcription 期刊论文
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2017, 卷号: 85, 期号: 6, 页码: 1002-1007
Authors:  Wu, SG;  Wu, SG (reprint author), Sichuan Normal Univ, Coll Chem & Mat Sci, Chengdu 610066, Peoples R China.
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Molecular Dynamics Simulation  T7 Rna Polymerase  Magnesium Ion  Transcription Mechanism  Free Energy  
Mechanism of pyrophosphate ion release in T7 RNA polymerase revealed by free energy simulations 期刊论文
COMPUTATIONAL AND THEORETICAL CHEMISTRY, 2016, 卷号: 1094, 页码: 127-132
Authors:  Wu, SG;  Jiang, MQ;  Liu, L;  Wu, SG (reprint author), Sichuan Normal Univ, Coll Chem & Mat Sci, Chengdu 610068, Peoples R China.
Adobe PDF(1649Kb)  |  Favorite  |  View/Download:24/1  |  Submit date:2017/10/13
Molecular Dynamics Simulation  T7 Rna Polymerase  Ppi Release  Potential Of Mean Force  
Mechanism of pyrophosphate ion release in T7 RNA polymerase revealed by free energy simulations 期刊论文
COMPUTATIONAL AND THEORETICAL CHEMISTRY, 2016, 卷号: 1094, 页码: 127-132
Authors:  Wu, SG;  Jiang, MQ;  Liu, L
Favorite  |  View/Download:0/0  |  Submit date:2019/04/08
Molecular dynamics simulation  PARTICLE MESH EWALD  T7 RNA polymerase  MOLECULAR-DYNAMICS  PPi release  TRANSLOCATION  Potential of mean force  DNA  
Mechano-chemical selections of two competitive unfolding pathways of a single DNA i-motif 期刊论文
CHINESE PHYSICS B, 2014, 卷号: 23, 期号: 6, 页码: 68702
Authors:  Xu, Y;  Chen, H;  Qu, YJ;  Efremov, AK;  Li, M;  Ouyang, ZC;  Liu, DS;  Yan, J;  Liu, DS (reprint author), Tsinghua Univ, Minist Educ, Dept Chem, Key Lab Organ Optoelect & Mol Engn, Beijing 100084, Peoples R China.
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G-quadruplex  Mechanical Stability  Rna-polymerase  Stranded-dna  Double Helix  B-dna  Molecule  Force  Proteins  Dynamics  
Motility of molecular motor 期刊论文
JOURNAL OF COMPUTATIONAL AND THEORETICAL NANOSCIENCE, 2007, 卷号: 4, 期号: 1, 页码: 71-76
Authors:  Shu, Yaogen;  Ou-Yang, Zhong-Can;  Shu, YG , Chinese Acad Sci, Inst Theoret Phys, POB 2735, Beijing 100080, Peoples R China
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Single Kinesin Molecules  Hand-over-hand  Dna-polymerase  Stranded-dna  Mechanism  Force  Replication  Movement  Dependence  Transport  
The elastic theory of a single DNA molecule 期刊论文
MODERN PHYSICS LETTERS B, 2003, 卷号: 17, 期号: 1, 页码: 1-10
Authors:  Ou-Yang, ZC;  Zhou, H;  Zhang, Y;  Ou-Yang, ZC , Chinese Acad Sci, Inst Theoret Phys, POB 2735, Beijing 100080, Peoples R China.
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Double-stranded Dna  Polynucleotide Chains  Stacking Interactions  Transitions  Polymerase  
The elastic theory of a single DNA molecule 期刊论文
PRAMANA-JOURNAL OF PHYSICS, 2003, 卷号: 61, 期号: 2, 页码: 353-360
Authors:  Zhou, HJ;  Zhang, Y;  Ou-Yang, ZC;  Zhou, HJ , Chinese Acad Sci, Inst Theoret Phys, POB 2735, Beijing 100080, Peoples R China.
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Double-stranded Dna  Supercoiled Dna  Polymerase  Mechanics  
The elastic theory of single-molecule DNA 期刊论文
INTERNATIONAL JOURNAL OF MODERN PHYSICS B, 2003, 卷号: 17, 期号: 40910, 页码: 69-75
Authors:  Ou-Yang, ZC;  Ou-Yang, ZC , Chinese Acad Sci, Inst Theoret Phys, POB 2735, Beijing 100080, Peoples R China, Peoples R China.
Adobe PDF(244Kb)  |  Favorite  |  View/Download:66/8  |  Submit date:2012/08/29
Double-stranded Dna  Supercoiled Dna  Polynucleotide Chains  Stacking Interactions  Transitions  Polymerase  Mechanics