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中国科学院理论物理研究所机构知识库
Knowledge Management System of Institute of Theoretical Physics, CAS
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SCI期刊论文 [21]
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Trade-offs between effectiveness and cost in bifunctional enzyme circuit with concentration robustness
期刊论文
PHYSICAL REVIEW E, 2020, 卷号: 101, 期号: 1, 页码: 12409
Authors:
Guan, Shaohua
;
Xu, Liufang
;
Zhang, Qing
;
Shi, Hualin
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View/Download:56/0
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Submit date:2020/06/16
CHEMICAL-SYSTEMS
GENE-EXPRESSION
PHOSPHORYLATION
NOISE
ORIGINS
GROWTH
SPEED
OMPR
ATP
Quantitative Connection between Cell Size and Growth Rate by Phospholipid Metabolism
期刊论文
CELLS, 2020, 卷号: 9, 期号: 2, 页码: 391
Authors:
Zhang, Zhichao
;
Zhang, Qing
;
Guan, Shaohua
;
Shi, Hualin
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View/Download:47/0
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Submit date:2020/06/16
HAEMOPHILUS-INFLUENZAE RD
GRAM-NEGATIVE BACTERIA
ESCHERICHIA-COLI
OUTER-MEMBRANE
FATTY-ACID
GUANOSINE TETRAPHOSPHATE
CARDIOLIPIN SYNTHASE
ADAPTIVE EVOLUTION
ENVELOPE
MODEL
A Decrease in Transcription Capacity Limits Growth Rate upon Translation Inhibition
期刊论文
MSYSTEMS, 2020, 卷号: 5, 期号: 5, 页码: e00575-20
Authors:
Zhang, Qing
;
Brambilla, Elisa
;
Li, Rui
;
Shi, Hualin
;
Lagomarsino, Marco Cosentino
;
Sclavi, Bianca
Adobe PDF(698Kb)
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View/Download:13/0
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Submit date:2020/11/26
RNA-POLYMERASE AVAILABILITY
ESCHERICHIA-COLI
RIBOSOMAL-RNA
GENE-EXPRESSION
PPGPP
EFFICIENCY
PROMOTERS
SUBUNITS
(P)PPGPP
REVEALS
Optimal Allocation of Bacterial Protein Resources under Nonlethal Protein Maturation Stress
期刊论文
BIOPHYSICAL JOURNAL, 2018, 卷号: 115, 期号: 5, 页码: 896-910
Authors:
Zhang, Q
;
Li, R
;
Li, JB
;
Shi, HL
Adobe PDF(765Kb)
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View/Download:112/0
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Submit date:2018/12/27
ESCHERICHIA-COLI PROTEOME
SIGMA-FACTOR COMPETITION
GENE-EXPRESSION
RNA-POLYMERASE
OXIDATIVE STRESS
GROWTH-INHIBITION
CELL-GROWTH
TRANSLATION
RATES
OVERPRODUCTION
Effects of cooperation between translating ribosome and RNA polymerase on termination efficiency of the Rho-independent terminator
期刊论文
NUCLEIC ACIDS RESEARCH, 2016, 卷号: 44, 期号: 6, 页码: 2554-2563
Authors:
Li, R
;
Zhang, Q
;
Li, JB
;
Shi, HL
;
Shi, HL (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
;
Li, JB (reprint author), Chinese Acad Sci, Inst Chem, Beijing 100190, Peoples R China.
;
Li, JB (reprint author), Natl Ctr Nanosci & Technol, Beijing 100190, Peoples R China.
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View/Download:135/2
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Submit date:2017/10/13
Strategy of tuning gene expression ratio in prokaryotic cell from perspective of noise and correlation
期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2015, 卷号: 365, 期号: 0, 页码: 377-389
Authors:
Li, R
;
Xu, LF
;
Shi, HL
;
Shi, HL (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
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View/Download:143/6
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Submit date:2016/11/21
Polar Effect
The Two-state Promoter
Transcription Terminator
Gene Expression Correlation
Operon Structure
Theoretical studies on sRNA-mediated regulation in bacteria
期刊论文
CHINESE PHYSICS B, 2015, 卷号: 24, 期号: 12, 页码: 128703
Authors:
Chang, XX
;
Xu, LF
;
Shi, HL
;
Xu, LF (reprint author), Jilin Univ, Dept Phys, Changchun 130012, Peoples R China.
Adobe PDF(1279Kb)
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Submit date:2016/11/21
Srna-mediated Regulation
Kinetic Model
Crosstalk
The energy pump and the origin of the non-equilibrium flux of the dynamical systems and the networks
期刊论文
JOURNAL OF CHEMICAL PHYSICS, 2012, 卷号: 136, 期号: 16, 页码: 165102
Authors:
Xu, LF
;
Shi, HL
;
Feng, HD
;
Wang, J
;
Xu, LF (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100190, Peoples R China.
Adobe PDF(1637Kb)
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View/Download:166/15
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Submit date:2014/04/25
Yeast-cell Cycle
Steady-state Thermodynamics
Funneled Landscape Leads
Mapk Signal-transduction
Chemical-reactions
Dissipation Cost
Gene-expression
Master Equation
Robustness
Fluctuations
Coupling chromosomal replication to cell growth by the initiator protein DnaA in Escherichia coli
期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2012, 卷号: 314, 期号: -, 页码: 164-172
Authors:
Zhang, Q
;
Shi, HL
;
Shi, HL (reprint author), Chinese Acad Sci, Inst Theoret Phys, State Key Lab Theoret Phys, Beijing 100190, Peoples R China.
Adobe PDF(691Kb)
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Submit date:2014/04/24
Sequential Binding
Auto-regulation
Division Cycle
Gene Promoter
Adp-dnaa
Origin
Sites
Model
K-12
Seqa
Quantifying the sequence-function relation in gene silencing by bacterial small RNAs
期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 卷号: 108, 期号: 30, 页码: 12473-12478
Authors:
Hao, Y
;
Zhang, ZJ
;
Erickson, DW
;
Huang, M
;
Huang, YW
;
Li, JB
;
Hwa, T
;
Shi, HL
;
Shi, HL (reprint author), Univ Calif San Diego, Div Biol Sci, Mol Biol Sect, La Jolla, CA 92093 USA.
Adobe PDF(552Kb)
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Submit date:2013/05/17
Small Regulatory Rnas
Small Noncoding Rnas
Messenger-rna
Escherichia-coli
Binding-sites
Soluble-rna
Translational Initiation
Vibrio-cholerae
Outer-membrane
Hfq-binding